PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027085706.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 573aa MW: 62012.3 Da PI: 6.9479

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027085706.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.3	2e-30	310	368	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++tYeg+Hnh+ XP_027085706.1 310 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTVLITTYEGTHNHP 368 7*********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 573 aa Download sequence
MDKGWGVTVD NPDKIGFFGN KPVFGFNLSP RLNPSKGSLS MFPATEFLAN QNRREDSHAA 60 ASSDGEKRVV VGEVDFFSDK KKANDILIKK EDCHGEDKMK TNMDVVNTGL QLVIANTGSD 120 QSTVDDGVSS DIEDKRAKLE LAQLQVELER MNAENRRLRE MLSQVSNNYT ALQMHLMTLM 180 HQQQQNAKPQ TTQDHEIGER KSEENKPENG GVVVPRQFLD LGPSGTAEMD EPTNSSSEER 240 TLSGSPRNNM ELSRNKGVGR EESPESQGWA PNKVAKLNAP SKTVDHAQAE ATMRKARVSV 300 RARSEAPMIT DGCQWRKYGQ KMAKGNPCPR AYYRCTMAVG CPVRKQVQRC AEDRTVLITT 360 YEGTHNHPLP PAAMAMASTT SAAANMLLSG SMSSADGLMN PNFLARTILP CSSNMATISA 420 SAPFPTVTLD LTQTPNPLQF QRQPSTPFQL PFGTPPQNFP PVANPQMHQV FGQALYNQSK 480 FSGLQVSQDI EAAAAAAAQM QNQGQHPQVQ QGQHQPSFAD TLSAATAAIT ADPNFTAALA 540 AAISSIIGGS HPSSSNNSNP TTSTPPTANF PGN

Sequence ? help Back to Top

Protein Sequence Length: 573 aa Download sequence

MDKGWGVTVD NPDKIGFFGN KPVFGFNLSP RLNPSKGSLS MFPATEFLAN QNRREDSHAA  60
ASSDGEKRVV VGEVDFFSDK KKANDILIKK EDCHGEDKMK TNMDVVNTGL QLVIANTGSD  120
QSTVDDGVSS DIEDKRAKLE LAQLQVELER MNAENRRLRE MLSQVSNNYT ALQMHLMTLM  180
HQQQQNAKPQ TTQDHEIGER KSEENKPENG GVVVPRQFLD LGPSGTAEMD EPTNSSSEER  240
TLSGSPRNNM ELSRNKGVGR EESPESQGWA PNKVAKLNAP SKTVDHAQAE ATMRKARVSV  300
RARSEAPMIT DGCQWRKYGQ KMAKGNPCPR AYYRCTMAVG CPVRKQVQRC AEDRTVLITT  360
YEGTHNHPLP PAAMAMASTT SAAANMLLSG SMSSADGLMN PNFLARTILP CSSNMATISA  420
SAPFPTVTLD LTQTPNPLQF QRQPSTPFQL PFGTPPQNFP PVANPQMHQV FGQALYNQSK  480
FSGLQVSQDI EAAAAAAAQM QNQGQHPQVQ QGQHQPSFAD TLSAATAAIT ADPNFTAALA  540
AAISSIIGGS HPSSSNNSNP TTSTPPTANF PGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-130	WRKY family protein