PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027085474.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LSD

Protein Properties

Length: 146aa MW: 15186.8 Da PI: 7.9541

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027085474.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.6	1.7e-12	28	52	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV Ca+C++V XP_027085474.1 28 CSGCRNLLVYPVGATSVVCAVCNAV 52 ************************9 PP
2	zf-LSD1	46.5	5.9e-15	68	92	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+t+ XP_027085474.1 68 CGGCHTLLMYIRGATSVQCSCCHTI 92 ***********************97 PP
3	zf-LSD1	41.9	1.7e-13	106	130	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V XP_027085474.1 106 CGNCRMLLMYQYGARSVKCAVCNFV 130 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence
MPVPLAPYPT PPVPFTPPAT GAQSQLVCSG CRNLLVYPVG ATSVVCAVCN AVTAVPPPAG 60 TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TINLAMEANQ VAHVNCGNCR MLLMYQYGAR 120 SVKCAVCNFV TSIGASASTI EQKFNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	5e-63	LSD family protein