PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027085366.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 317aa MW: 35457.2 Da PI: 9.9478 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.9 | 1.7e-05 | 89 | 111 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_027085366.1 89 FICEICNKGFQRDQNLQLHRRGH 111 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.3 | 0.00025 | 166 | 188 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + XP_027085366.1 166 WKCEKCSKRYAVQSDWKAHSKIC 188 58*****************9876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence |
MMKAAGMVVE DSMSNLTSGS NDASISSGNR LEIGAVYPQQ QQLPPLASSP TNQSAQPASK 60 KKRNLPGNPD PEAEVIALSP RTLLATNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLKQR 120 SNKEVIRKKV YICPETTCVH HDPSRALGDL TGVKKHFSRK HGEKKWKCEK CSKRYAVQSD 180 WKAHSKICGT REYRCDCGTL FSRRDSFITH RAFCDALAEE SARAITTNNH PLGLLGGGGN 240 STTSSVQLHL QNHPLHGGGL PVFPLKREQD QLQLQLQRQQ SFNSNLRPPE LPPWLSDPGE 300 VHQQVMTCSA TRDWTKP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 129 | KLKQRSNKEVIRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55110.1 | 1e-118 | C2H2 family protein |