PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027085297.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 337aa    MW: 36238 Da    PI: 7.16
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027085297.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.8e-12105149347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ Iar     Rt+ q+ s+ qky
   XP_027085297.1 105 PWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKY 149
                      8*****************************89************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MTRRCSHCSQ NGHNSRTCPN RGVKLFGVRL TDGLIRKSAS MGNLSHYSSS GSGSGSATPQ  60
NGLAAHDSPG DTPDHPSAAA AADGYASEDF VAGSSSSRER KKGVPWTEEE HRMFLLGLQK  120
LGKGDWRGIA RNYVISRTPT QVASHAQKYF IRQSNVSRRK RRSSLFDIVP DESADATMVS  180
RDFFSVNPPE AETQSNNELP AAAMEEEVES VDSANSIDVE AVPPKPDSSQ YSYPVVYPTY  240
VAPFFPVAFP MWSGYGTEPT RQESHEVVKP TAVHSKSPIN VDELVGMSKL SLGDSLGDGR  300
PPLSLKLADG SRQSAFHANP SSGTSGMNSS HSPIHAV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-129MYB_related family protein