PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027084679.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

CO-like

Protein Properties

Length: 346aa MW: 38156.6 Da PI: 6.4391

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027084679.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.8	3.8e-07	11	43	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ ++ ++ fC+ ++ +lC C +++H XP_027084679.1 11 KPCDSCKATSASVFCRADSAFLCLACDSKIHAA 43 67****99*******************54 PP
2	zf-B_box	27.6	6.2e-09	53	98	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC+ C +H+ H+++p+ XP_027084679.1 53 VWVCEVCEQAPASVTCKADAAALCNACDRDIHSAnplarrHERIPI 98 689*****************************66899999999886 PP
3	CCT	69.7	7.4e-24	283	327	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k+ae XP_027084679.1 283 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRAE 327 9*****************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MGAEGWSLTA KPCDSCKATS ASVFCRADSA FLCLACDSKI HAANKLASRH GRVWVCEVCE 60 QAPASVTCKA DAAALCNACD RDIHSANPLA RRHERIPITP FFDSASAARC TGASDEKCLL 120 DLGSEAEEAE AASWLLPNPN CNKDLEPDSP EYKTADYLFT DMDPYLDMDL ISSDQKPHVV 180 QYQNHHHNHV HQQHNSDGVV PVQNKNDPTH LPGPVVDGFP TYEMDFAGSK SFMYNFSSQS 240 ISQSVSSSSM EVGVVPDHNA MADVSNNFSR SDAVTNPVSG VDREARVLRY REKRKNRKFE 300 KTIRYASRKA YAETRPRIKG RFAKRAEVEI ESLIVADASY GVVPTY

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MGAEGWSLTA KPCDSCKATS ASVFCRADSA FLCLACDSKI HAANKLASRH GRVWVCEVCE  60
QAPASVTCKA DAAALCNACD RDIHSANPLA RRHERIPITP FFDSASAARC TGASDEKCLL  120
DLGSEAEEAE AASWLLPNPN CNKDLEPDSP EYKTADYLFT DMDPYLDMDL ISSDQKPHVV  180
QYQNHHHNHV HQQHNSDGVV PVQNKNDPTH LPGPVVDGFP TYEMDFAGSK SFMYNFSSQS  240
ISQSVSSSSM EVGVVPDHNA MADVSNNFSR SDAVTNPVSG VDREARVLRY REKRKNRKFE  300
KTIRYASRKA YAETRPRIKG RFAKRAEVEI ESLIVADASY GVVPTY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	2e-98	CO-like family protein