PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027084415.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 296aa    MW: 32545.7 Da    PI: 9.6822
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027084415.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.66.8e-14107152247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+ +++ + ++lG g+W+ I+r + ++Rt+ q+ s+ qky
   XP_027084415.1 107 MPWTEEEHRIFLVGLEKLGRGDWRGISRNFVTTRTPTQVASHAQKY 152
                      69*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MGRKCSCCGT TGHNSRTCPT QRRRNAARMK LFGVQLLDQS PFPSSSNNLS MKKSFSVDSL  60
SVSQFNAPSG SRTPSCSPSP QDHVLLESSG YLSDGLIQTT QEKKKGMPWT EEEHRIFLVG  120
LEKLGRGDWR GISRNFVTTR TPTQVASHAQ KYFLRQNSLN RKINRRPSLF DMVERDKSAL  180
QSVRPIFSLS IEQECSISGG MLLPKISTAS CMVNFSSSSP PEQDLKSSQV PVPVGVSESL  240
EHSFIPSSSS STNPEHDHDQ NSSSPPPNLE LTLAVPQARH NQRKPISVAS CLLTVV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.14e-52MYB_related family protein