PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027084391.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 417aa MW: 47402.3 Da PI: 9.4791

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027084391.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.7	1.8e-17	122	214	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k ++ps v+ +l pk+f+++h+ k ++ ++l de+ +++++k+ +k++ l++GW++F ++L gD+++F+l+++++f+++v+ XP_027084391.1 122 FVKLMLPSQVSGGFWLQWPKDFCQKHMPK--KDEYIVLLDENEKEYDIKYLAQKSG----LSGGWRGFSIKHQLSKGDVLIFQLVDSNKFKFKVH 210 89**********************866..4558***********555555....9********************99****** PP EE-S CS B3 96 vfrk 99 +f++ XP_027084391.1 211 IFKA 214 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MGKYVFVKPT RKRITCMQKE NTINKKPKRE SCPPMKVKIE VDEMRITCYD EMMEKNVESS 60 HAGSDKTKSS PQENRKQIMC YSKNVETSSD SSMAGSDKAK STALLDRANE FVAKLPSDDP 120 NFVKLMLPSQ VSGGFWLQWP KDFCQKHMPK KDEYIVLLDE NEKEYDIKYL AQKSGLSGGW 180 RGFSIKHQLS KGDVLIFQLV DSNKFKFKVH IFKAKGGSRK LERDNGLLNS EGKVASEIAK 240 DVKETESFNI LWNGEVIDSE ISEHVRSQYY QLCCSQKSGL HDGLVKCIDK KLAAGIISET 300 VKIADAIRAA EITTTSCNDV QRWDQTLKGF EGMGMNVAFL RAAIKNILDS IQRKQQEKIK 360 RKTNERAQAE KEMRNLETQL ANVKKKIRVL DDEINNVLRA QNEKHEHSFK EAASAPS

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MGKYVFVKPT RKRITCMQKE NTINKKPKRE SCPPMKVKIE VDEMRITCYD EMMEKNVESS  60
HAGSDKTKSS PQENRKQIMC YSKNVETSSD SSMAGSDKAK STALLDRANE FVAKLPSDDP  120
NFVKLMLPSQ VSGGFWLQWP KDFCQKHMPK KDEYIVLLDE NEKEYDIKYL AQKSGLSGGW  180
RGFSIKHQLS KGDVLIFQLV DSNKFKFKVH IFKAKGGSRK LERDNGLLNS EGKVASEIAK  240
DVKETESFNI LWNGEVIDSE ISEHVRSQYY QLCCSQKSGL HDGLVKCIDK KLAAGIISET  300
VKIADAIRAA EITTTSCNDV QRWDQTLKGF EGMGMNVAFL RAAIKNILDS IQRKQQEKIK  360
RKTNERAQAE KEMRNLETQL ANVKKKIRVL DDEINNVLRA QNEKHEHSFK EAASAPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-33	B3 family protein