PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027084327.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 177aa MW: 20046.7 Da PI: 5.1287

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027084327.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13	0.00019	24	60	15	55
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r N + L llP + + l+ + ++e A++YIk+L+ XP_027084327.1 24 RYNRQLRALSNLLPGS----KAELDEVLVVENATKYIKHLE 60 6688999999999998....788****************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence
MDPSYATGAS KMLKDRKRQR EEKRYNRQLR ALSNLLPGSK AELDEVLVVE NATKYIKHLE 60 ERVDSLERRL DSTTGEEDEQ SSVVLSEDTK SDSDSDSSLP QILVYISLRD VIISIQCKNH 120 KNIIWETISE VEKQQLSVIS FNTMSFGRAE LVINILAKRL QVFAGPIQGS DDVAHLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22770.1	4e-15	bHLH family protein