PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027084202.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 317aa MW: 34925.2 Da PI: 8.2151

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027084202.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	2.8e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed l+d++k +G g W++ +++ g++R++k+c++rw++yl XP_027084202.1 14 KGAWSPSEDRMLIDYIKSHGQGKWRSLPKRAGLKRCGKSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	50.2	5.9e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_027084202.1 67 RGNITDDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNFWNTN 111 7999****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
MGRTPCCAKE GLKKGAWSPS EDRMLIDYIK SHGQGKWRSL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TDDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNFWNT NLAKKIGGPQ 120 HLAAEPSSST TRSRAAPALQ NPTSTHQPSN TEKLEGSPTH VVRTKARRLT KGFINADLQT 180 SCTQQQPGII MAPSGAAAKD NFSEARTTDK SEKVGPDPAS GAFSGKGGYY SSDFVMDFEM 240 DDDFLSDFLN KDFVGFEQDF PQVLANGTCV ETNGEANDFS PNCCPKPLSQ VDRNDHGDLG 300 SMPTLLDTAL AWLNEGH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	1e-61	MYB family protein