PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027084142.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 587aa MW: 66089.1 Da PI: 6.4304

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027084142.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.3	2.4e-29	424	508	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev aLi++r+++e++++r k+plWe++s+ m++ gf+rs+k+Ckekwen+nk++kk +e++k+ ++ +tc+yfdql+ XP_027084142.1 424 RWPKAEVEALIQIRSSLEQKFQRPGIKGPLWEQISNSMASMGFQRSAKRCKEKWENINKYFKKSRENAKQC-RKKFKTCQYFDQLD 508 8******************************************************************97.66678******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence
MGENHQQQPV FSANQSHQYN HQQPYIFQET QNFQTIPDFF HYHHHFQALL QQQRRLQDQL 60 QQCVLGQENV VSTSATTAAV AGNNIRPSVS FFPLNFKPPD LNENITSSKN GGLDDDGSED 120 DLFRRNSAAA AALAMASPHY CWQNQEDSAT AIRQPFWKPL CTNISDGNNN SQDKEVRLEM 180 HQNKYYKSSE DTEQMNSSLE NSKNRLFGEL ESICRSASVA SEANKTGGAS AGNLATTTST 240 CLPITLDKHN TNAGATAAAA AIGHCHDGSE SISGHEAPVA VVSKNMKRKK LKDELSSMAI 300 FFEGLVHQLM DHQEALHSNF MNAIERLDKE RREREDAWRR QELEKLEQDM ATRARERALA 360 SSREASIVSY LEKITGQSIK LPPRNHPSDF QPAMISSGAM NGELSPSTSK VCRDHLSINM 420 TSRRWPKAEV EALIQIRSSL EQKFQRPGIK GPLWEQISNS MASMGFQRSA KRCKEKWENI 480 NKYFKKSREN AKQCRKKFKT CQYFDQLDQL HSKSQLANGG SYSCSSSSEH QAKPNNENQL 540 PNPIEGLVPA RNFRQGEFYC IPSMNVSEEE EEEEGEDGNV DYPDEGD

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence

MGENHQQQPV FSANQSHQYN HQQPYIFQET QNFQTIPDFF HYHHHFQALL QQQRRLQDQL  60
QQCVLGQENV VSTSATTAAV AGNNIRPSVS FFPLNFKPPD LNENITSSKN GGLDDDGSED  120
DLFRRNSAAA AALAMASPHY CWQNQEDSAT AIRQPFWKPL CTNISDGNNN SQDKEVRLEM  180
HQNKYYKSSE DTEQMNSSLE NSKNRLFGEL ESICRSASVA SEANKTGGAS AGNLATTTST  240
CLPITLDKHN TNAGATAAAA AIGHCHDGSE SISGHEAPVA VVSKNMKRKK LKDELSSMAI  300
FFEGLVHQLM DHQEALHSNF MNAIERLDKE RREREDAWRR QELEKLEQDM ATRARERALA  360
SSREASIVSY LEKITGQSIK LPPRNHPSDF QPAMISSGAM NGELSPSTSK VCRDHLSINM  420
TSRRWPKAEV EALIQIRSSL EQKFQRPGIK GPLWEQISNS MASMGFQRSA KRCKEKWENI  480
NKYFKKSREN AKQCRKKFKT CQYFDQLDQL HSKSQLANGG SYSCSSSSEH QAKPNNENQL  540
PNPIEGLVPA RNFRQGEFYC IPSMNVSEEE EEEEGEDGNV DYPDEGD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	4e-36	Trihelix family protein