PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027083766.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 392aa    MW: 45195.6 Da    PI: 10.1977
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027083766.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.3e-141694999
                    HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      +k+g l +p +f  ++  g + ++    +l  +  r+W+vk+  +++s    l++GW++F+ +n+L++gDfv Fk++g++ f   v+vf+ 
  XP_027083766.1 16 PGFKNG-LKIPVSFS-KYlcG-E-RS--NYVLLRRGVREWRVKM--SGQS----LEEGWRKFAVENNLEVGDFVAFKHEGNMVF--DVRVFDP 94
                    556666.*******8.77554.2.23..588888999*******..8887....************************999999..8888875 PP
2B358.21.5e-18165245487
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       +++++ k+++l +p  fa+++++ + +s +++l+d++ +sW+v++    k +++ +++GW+ F kangLk gD++ ++l+++
  XP_027083766.1 165 SSIKPYSIKNSILHIPLGFARANNLRN-RSCEVILRDPQQKSWQVEM--VPKASHVCFKRGWSAFFKANGLKLGDTFKIELVEN 245
                     56789******************8885.677****************..99999*************************99874 PP
3B364.51.6e-20291377595
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ++++++ k ++l lp kfa++ g++k  + +++l+de+ r+W+v+l  ++k++++++++GW++F  +ngLkegD+  F+l++ ++++++v 
  XP_027083766.1 291 TIKAYSIKYSILHLPMKFARSTGLIK-LNEEMILRDERERQWSVRL--QQKGKHVLISSGWSKFRTSNGLKEGDTYKFELIK-KGQRPLVN 377
                     56899999**************9997.556****************..9*******************************99.67777776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    
MRVSPEKPHF FKPILPGFKN GLKIPVSFSK YLCGERSNYV LLRRGVREWR VKMSGQSLEE  60
GWRKFAVENN LEVGDFVAFK HEGNMVFDVR VFDPSHCERE YPWIHDVTSE TIGLRRNKAR  120
TRLTAKSGIS IDSEGNSEEN EESTPTSRKA SSHDDEEPKK PYFVSSIKPY SIKNSILHIP  180
LGFARANNLR NRSCEVILRD PQQKSWQVEM VPKASHVCFK RGWSAFFKAN GLKLGDTFKI  240
ELVENGKIPV LDFVPCLTSS NKEPHLQRPT PPQPRPFSTS NNDHPNSFVS TIKAYSIKYS  300
ILHLPMKFAR STGLIKLNEE MILRDERERQ WSVRLQQKGK HVLISSGWSK FRTSNGLKEG  360
DTYKFELIKK GQRPLVNFYC NFSEEDKPAM NR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.12e-50B3 family protein