PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027083408.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 324aa    MW: 36928.6 Da    PI: 6.5296
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027083408.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.15.5e-12331071494
                     T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     + l +p  +a+ + g+   +   +l+d +g+ W v+l   k +++ ++++GW + v++n ++  Df+vF +dg++ f   +
  XP_027083408.1  33 NKLHIPSAYASYMRGN--LPDRAVLRDCDGNMWAVEL--AKVGSEWFFQEGWAKVVQDNLIEHQDFLVFLFDGEKVF--DF 107
                     5699******555666..6668***************..888888899**********************9998888..44 PP
2B337.64e-122273111096
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..EEEE CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsefelvvkv 96 
                     + +++ l +p + ++++ ++   +  +tl+d+ gr+W  +l+ +k +++y+ ++GW + +k n ++e D +v +++ gr ++++v+++
  XP_027083408.1 227 TKRQNALFIPIDVIKDFRLD--LPENMTLRDPLGRTWPAYLRTWKDGRAYY-SGGWDNLCKVNSIDEEDDCVCEFVpGRGQEKPVMQI 311
                     5667889*******999888..5667****************9***98887.56********************98677888888765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MANPQARANL ATQAQSQRNL KFCKVFDANK YFNKLHIPSA YASYMRGNLP DRAVLRDCDG  60
NMWAVELAKV GSEWFFQEGW AKVVQDNLIE HQDFLVFLFD GEKVFDFTII GNNLLEKEGV  120
GSLKFQLEVE KGNGNGEKAQ ELNDMNGDNL IEEKEQPLNG VKRDFQKLTS PTSGSRKYRS  180
EKNGQEGASA SDGIKKKARH DLYGASIFRS GEHALPENPY FVTRIRTKRQ NALFIPIDVI  240
KDFRLDLPEN MTLRDPLGRT WPAYLRTWKD GRAYYSGGWD NLCKVNSIDE EDDCVCEFVP  300
GRGQEKPVMQ IQIIRQKNAP ETCD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.16e-23B3 family protein