PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027083096.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HSF

Protein Properties

Length: 344aa MW: 37559.7 Da PI: 4.7676

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027083096.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115.5	3.3e-36	33	124	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d++++elisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++ F++g+k ll++ XP_027083096.1 33 FLTKTYQLVDDPSIDELISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFRRGEKGLLRD 118 9***************************************************************99.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k XP_027083096.1 119 IQRRKI 124 *985 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MAPMPVEQTG ESPTAGGGGG GGGESQRTLP TPFLTKTYQL VDDPSIDELI SWNEDGTTFI 60 VWRPAEFARD LLPKYFKHNN FSSFVRQLNT YGFRKVVPDR WEFANDCFRR GEKGLLRDIQ 120 RRKISPAAPS PVVATPPAAV IANAQAVVTV AVPPPMRVVS PANSGDEQVV SSNSSPAATT 180 VLPTACTTTP EILEENERLR KENAQLNREL NRLRGLCGNI YNLMSNYAGN QAETSGGELP 240 EERALDLMTG RRVTVEMDGG GAAGGGAVKA EEEEYVSPRL FGVSLGVKRV RRSDDEDNEI 300 QGRDHKEADA SEGKSEPSDC RVDNHRDDQA WLDISIRRKS EGES

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MAPMPVEQTG ESPTAGGGGG GGGESQRTLP TPFLTKTYQL VDDPSIDELI SWNEDGTTFI  60
VWRPAEFARD LLPKYFKHNN FSSFVRQLNT YGFRKVVPDR WEFANDCFRR GEKGLLRDIQ  120
RRKISPAAPS PVVATPPAAV IANAQAVVTV AVPPPMRVVS PANSGDEQVV SSNSSPAATT  180
VLPTACTTTP EILEENERLR KENAQLNREL NRLRGLCGNI YNLMSNYAGN QAETSGGELP  240
EERALDLMTG RRVTVEMDGG GAAGGGAVKA EEEEYVSPRL FGVSLGVKRV RRSDDEDNEI  300
QGRDHKEADA SEGKSEPSDC RVDNHRDDQA WLDISIRRKS EGES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11660.1	1e-87	HSF family protein