PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027082999.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

CPP

Protein Properties

Length: 858aa MW: 92181.2 Da PI: 6.1428

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027082999.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48	2.5e-15	445	483	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkk+kClk+YC+Cfaag +C+e C C++C+N+ e XP_027082999.1 445 CKRCNCKKTKCLKLYCDCFAAGIYCAEPCACQGCFNRPE 483 79**********************************876 PP
2	TCR	49.1	1.1e-15	532	570	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkkskClkkYCeC++a++ Cs+ C+Ce C+N XP_027082999.1 532 RHKRGCNCKKSKCLKKYCECYQANVGCSDGCRCEACENV 570 589***********************************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 858 aa Download sequence
MDSSPEQPSK PNNSTHSPPL PIPPHQVQES PVFSYISNLS PIKPDKAALG SQGFPGINSP 60 PLVFRSPHIN PKSQPSFLKR PQSAGSSDAG LSEQNESCKD TLTVAEESRV SSCHLSSRLI 120 SCPQKEFIDD SKPEKASSPP VCGNDYLTDI VNMDGGDSDS SANLTPKSSD DVSQSQHELL 180 DSKESAENTE DKDDTRREEM KMGAASVTLE QAEEYNLKDS PSDLKSVVPD QNSGDGNGPP 240 DLHPRVEPDK SVGHALENQS GGRSMAENAG SGHVFEVGCN LLSESLQVAQ DCGRSLENTG 300 VQCTESLENK VHGHCAQMGS GAKVSMRSAE RGSFNGLGKK SMSITGSSLR HNFSTSANVE 360 GVPISDESRH NEHASDAANS ASTLSPCSMK PLYEPVVLKP IELQPNSSNK RMCTSETSDS 420 FVDFGQSSPK KKRKKTLDAG DGSGCKRCNC KKTKCLKLYC DCFAAGIYCA EPCACQGCFN 480 RPEYEDTVLE TRQQIESRNP LAFAPKIIQH LTEPPTNVCA EDGSHFTPSS ARHKRGCNCK 540 KSKCLKKYCE CYQANVGCSD GCRCEACENV YGQKGEFGMI KDLISKHGEK LDSSFGTTLE 600 SVASKDGLLH NELYNPHSLT PLTPAFQCSD HGKGAPKAWL SSGGYLQSPE SCLTYLAPYG 660 MSPGQAGNPD THNMIIEANT GIMDLVSFGQ GIGYGNEHTV NQLSPRCEVP RNDGRLAALP 720 DPQDWENTSR AQTYANHQVS SANSLRWRRS STHFDGNKPD EAADFDGGLY SILDDDTPEI 780 LKEIPMPPNA IKVSSPNKKR VSPPHGQGAE LGSSSSAGLR TGRKFILQAV PSFPPLTPCI 840 DSKGATGMNN SQKSSSGK

Sequence ? help Back to Top

Protein Sequence Length: 858 aa Download sequence

MDSSPEQPSK PNNSTHSPPL PIPPHQVQES PVFSYISNLS PIKPDKAALG SQGFPGINSP  60
PLVFRSPHIN PKSQPSFLKR PQSAGSSDAG LSEQNESCKD TLTVAEESRV SSCHLSSRLI  120
SCPQKEFIDD SKPEKASSPP VCGNDYLTDI VNMDGGDSDS SANLTPKSSD DVSQSQHELL  180
DSKESAENTE DKDDTRREEM KMGAASVTLE QAEEYNLKDS PSDLKSVVPD QNSGDGNGPP  240
DLHPRVEPDK SVGHALENQS GGRSMAENAG SGHVFEVGCN LLSESLQVAQ DCGRSLENTG  300
VQCTESLENK VHGHCAQMGS GAKVSMRSAE RGSFNGLGKK SMSITGSSLR HNFSTSANVE  360
GVPISDESRH NEHASDAANS ASTLSPCSMK PLYEPVVLKP IELQPNSSNK RMCTSETSDS  420
FVDFGQSSPK KKRKKTLDAG DGSGCKRCNC KKTKCLKLYC DCFAAGIYCA EPCACQGCFN  480
RPEYEDTVLE TRQQIESRNP LAFAPKIIQH LTEPPTNVCA EDGSHFTPSS ARHKRGCNCK  540
KSKCLKKYCE CYQANVGCSD GCRCEACENV YGQKGEFGMI KDLISKHGEK LDSSFGTTLE  600
SVASKDGLLH NELYNPHSLT PLTPAFQCSD HGKGAPKAWL SSGGYLQSPE SCLTYLAPYG  660
MSPGQAGNPD THNMIIEANT GIMDLVSFGQ GIGYGNEHTV NQLSPRCEVP RNDGRLAALP  720
DPQDWENTSR AQTYANHQVS SANSLRWRRS STHFDGNKPD EAADFDGGLY SILDDDTPEI  780
LKEIPMPPNA IKVSSPNKKR VSPPHGQGAE LGSSSSAGLR TGRKFILQAV PSFPPLTPCI  840
DSKGATGMNN SQKSSSGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	431	435	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	3e-62	CPP family protein