PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027082951.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 328aa    MW: 36780.6 Da    PI: 6.876
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027082951.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-181158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd++lv++++++G g+W t ++  g++R++k+c++rw +yl
   XP_027082951.1 11 KGPWSIEEDQRLVEYIEKHGQGNWQTLPKQAGLNRCGKSCRLRWTNYL 58
                     79********************************************97 PP
2Myb_DNA-binding52.89.2e-1764109148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE+  ++ ++kqlG++ W++Ia++++ +Rt++++k++w+++l
   XP_027082951.1  64 RGGFSAEEEAAIIALHKQLGNK-WSRIAAHLP-RRTDNEIKNFWNTHL 109
                      7889******************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MVRPPEKGVK KGPWSIEEDQ RLVEYIEKHG QGNWQTLPKQ AGLNRCGKSC RLRWTNYLRP  60
GIKRGGFSAE EEAAIIALHK QLGNKWSRIA AHLPRRTDNE IKNFWNTHLK KKLLRRGIDP  120
TTHKPVPDFS LLNLSQAQLL SVSDLYNFIN PLDAALNLQA NANDLIKFQL LKNMMQAINP  180
NPLPYIQGNT NLADLIQLNR LFDGTNTDFT VDPLQAQSMN TSFCNISPLL NQQQTSTSHS  240
LPCLDGQITP GPILDDGFNV SSSNMYNSEY SLPSLVSVTP ESSIINPFES FKHGSIPAEA  300
PEQSNVFDDW NSLVNDEASS LFWKDVLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.28e-67MYB family protein