PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027082621.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 277aa MW: 30588.1 Da PI: 6.4319

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027082621.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	114.7	6e-36	45	143	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa++C+la+yfp +++k+f n+hklFG +n++k+++++++++r++am+s++ +A++ra+dPv G+++vi++lq+q++ +ael+ XP_027082621.1 45 ACAACKYHRRKCAPGCPLARYFPPDHQKQFLNAHKLFGLRNMMKVYNTVNPNDRHRAMQSMIIQANIRASDPVGGCHRVIQELQKQIQFCRAELD 139 7********************************************************************************************99 PP DUF260 96 llke 99 l+ + XP_027082621.1 140 LVLT 143 8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MNGTNNHQNN KSKVLNNTAE PSSSSSNSNN TKRTTAGAST SDTRACAACK YHRRKCAPGC 60 PLARYFPPDH QKQFLNAHKL FGLRNMMKVY NTVNPNDRHR AMQSMIIQAN IRASDPVGGC 120 HRVIQELQKQ IQFCRAELDL VLTQLAHIHS LRSAAGTGAE EPLPNPINPG MYVAGAQSMH 180 IQPEPEDFGG YADLYVGHKD EDIQGDINPS TSYGHLSPTP LLVDGSEDIK VLFDGYEDIK 240 PDLIESKNLN LSSEDEEPKD EVNIPKQPKQ ENIENAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	8e-37	LBD family protein