PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027082503.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 423aa    MW: 48361.4 Da    PI: 10.0428
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027082503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.6e-152095994
                    HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                      +k+g l +p +f  ++  g + ++    +l  +  r+W+vk+  +++s    l++GW++F+ +n+L++gDfvvFk++g++ f  +v
  XP_027082503.1 20 PGFKNG-LKIPVSFS-KYlcG-E-RS--NYMLLRRGAREWRVKM--SGQS----LEEGWRKFAVENNLEVGDFVVFKHEGNMVFDAMV 95
                    566666.*******8.77554.2.23..699999999*******..8887....************************9999886655 PP
2B357.42.6e-18187267487
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       ++++  k+++l +p  fa+++++ + +s +++l+d++ +sW+v++    k +++ +++GW+ F kangLk gD++ ++l+++
  XP_027082503.1 187 SSIKPYCIKNSNLHIPLGFARANNLRN-RSCEVILRDPQQKSWQVEM--VPKASHVCFRRGWSAFFKANGLKLGDTFKIELVEN 267
                     56789999***************8885.677****************..99999*************************99874 PP
3B360.43.1e-19330417596
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     ++++++ k ++l lp kfa++ g++k ++ +++l+de+ r+W+v+l  + k++++++++GW +F  +ngLkegD+  F+l++ ++++++v +
  XP_027082503.1 330 TIKAYSIKYSILHLPMKFARSTGLIKLNG-EMILRDERKRQWSVRL--QLKGKHVLISSGWTKFRTSNGLKEGDTYKFELIK-KGERPLVNF 417
                     56899999***************998665.****************..899999**************************99.677778765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    
MSNSNLISPE KPHFFKPILP GFKNGLKIPV SFSKYLCGER SNYMLLRRGA REWRVKMSGQ  60
SLEEGWRKFA VENNLEVGDF VVFKHEGNMV FDAMVCGPSH CEREYTWIHD VTNDEPKEED  120
IPSSKKFKSA GETIGLRRNK ARTRLTAKSG ISIDSEGNSE ENEESTPTSR KASSDDDEEP  180
NKPYFVSSIK PYCIKNSNLH IPLGFARANN LRNRSCEVIL RDPQQKSWQV EMVPKASHVC  240
FRRGWSAFFK ANGLKLGDTF KIELVENGKI PVLDFVPCLT SSNKEPHLKR PTPPQPRPFS  300
TVKPKGKCLD KKLEASPESN NDHPNSFVST IKAYSIKYSI LHLPMKFARS TGLIKLNGEM  360
ILRDERKRQW SVRLQLKGKH VLISSGWTKF RTSNGLKEGD TYKFELIKKG ERPLVNFYCK  420
YCF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.16e-52B3 family protein