PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027081005.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GRF

Protein Properties

Length: 384aa MW: 41889.4 Da PI: 8.168

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027081005.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.3	1.5e-24	98	142	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ XP_027081005.1 98 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 142 79****************************************985 PP
2	QLQ	65	1.9e-22	37	72	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+q+L++Q+++yKyL+a++PvPpeL+++i++ XP_027081005.1 37 PFTAVQWQELEHQAMIYKYLNAGLPVPPELVVPIRR 72 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MSGTSSTSVV TVASAGGGGV GEGVGVGAGG GCYYRPPFTA VQWQELEHQA MIYKYLNAGL 60 PVPPELVVPI RRSFEALSSR FFHHPSLGYC SYYGKKFDPE PGRCRRTDGK KWRCSKDAYP 120 DSKYCERHMH RGRNRSRKPV ESHSASQSLS TAMPHMAAGS SSSSGIFQNS GTGSFHNMPM 180 YSVANSEGLY SGSNVTKFQL EPVSYGGDNK EYRYIHGLTP DADQHNFSPE ASGSVGSLGV 240 GSDVGNTWRL LPSQVPSSPM LKSKSDAHTL GHSSDLHIAH AFDPMMDARL SKQRQQHCFF 300 GSEIGSPGPG KQEPHSMRPF FDEWPTTKES WSNLDDAGSN KSTFSTTQLS ISIPMAHAEF 360 SSKNSRSPDG EEFSSWTKHD LPRL

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MSGTSSTSVV TVASAGGGGV GEGVGVGAGG GCYYRPPFTA VQWQELEHQA MIYKYLNAGL  60
PVPPELVVPI RRSFEALSSR FFHHPSLGYC SYYGKKFDPE PGRCRRTDGK KWRCSKDAYP  120
DSKYCERHMH RGRNRSRKPV ESHSASQSLS TAMPHMAAGS SSSSGIFQNS GTGSFHNMPM  180
YSVANSEGLY SGSNVTKFQL EPVSYGGDNK EYRYIHGLTP DADQHNFSPE ASGSVGSLGV  240
GSDVGNTWRL LPSQVPSSPM LKSKSDAHTL GHSSDLHIAH AFDPMMDARL SKQRQQHCFF  300
GSEIGSPGPG KQEPHSMRPF FDEWPTTKES WSNLDDAGSN KSTFSTTQLS ISIPMAHAEF  360
SSKNSRSPDG EEFSSWTKHD LPRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	6e-49	GRF family protein