PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027080875.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 769aa    MW: 83306.8 Da    PI: 5.493
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027080875.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS289.31e-884087683374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     ++L+++ e v +g+++ aq +Larl+++ sp+ +p+qR+a+yf+eAL+  l+     ++ +l+  +    + + ++ a+k++sevsP+++f ++t
  XP_027080875.1 408 DQLYKATELVLAGNFSHAQGILARLNHQLSPAVKPFQRAAFYFKEALQLLLLLPNRAISPSLRIPTPL--DGIFKMGAYKMLSEVSPLIQFKNFT 500
                     689*************************************************9888888887666654..6************************ PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..e 190
                      Nqa+lea++ +  +HiiDfdi+ G+QW +++q+L  +++g+ sl+iT+++sp++ ++ e++ ++e L++fA+ lg++fe +v+  ++++    +
  XP_027080875.1 501 SNQALLEALDDAANIHIIDFDIGCGAQWSSFMQELPRKNRGATSLKITAFASPSAYHSVEISLMHESLTHFANDLGIKFELEVVNFDSFDPSgyS 595
                     ***********************************************************************************977766654337 PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                      +++r ++ +++aVn+ l    + ++++ l+s    +L ++k+lsPk+v++ ++ +++ + +  +++l+al+yy +++ds++a    +s++ +k+
  XP_027080875.1 596 ASSFRSSESDTIAVNFPLWS--VSSRPTILPS----LLCFIKQLSPKIVIMLDHGCERFELPPSHHLLNALQYYEVFLDSVDAA-NMASDAVNKI 683
                     88899999********9944..4434555555....*********************************************766.57999***** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     Er+l+++ ++++v  + ++     ++   W + + +aGF++vp+s++a++qa++++++ +++g++ve++++slvl W++r+L+s+S+W+
  XP_027080875.1 684 ERFLIQPTVESIVFGRLQS----PNQIPPWTNLFASAGFSSVPISNFAETQAECVVKRSQVRGFHVEKRQASLVLSWQRRELLSASVWK 768
                     *************887776....999**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    
MLGMQYNTNL QTKGVLEVGC FASSISSAEA KCKKDGNFTS NEPISVLDTR SPSPSTSTST  60
LSSSFGGTNG GGTSENTPNL VVGSHRNTLK GAAPLDPITT ASATNGEGGG VKEEWVTELP  120
AGLELSQDGP ERYNLGLEDW ETFLCESTGQ DQSLIRWIAG DIEDPSFSLK QLLQGGNSSE  180
IESNVGVGGI DQSSGFEALA TGGCTANNGN VLPTLSSSPL GLSGSGNSFD SNNGKFGSVP  240
SSLNSNNKNG NSQNLFPLPP NSSLGMPDGV NVAHQQQLQF ATIPEQKSPN FMPHVMISTP  300
QFQNAPNLNL LNSLLSCTNQ DQPQPKRQNL GILNPAASSQ IPKVPLLDPD PNLLLRKQQE  360
LQFGLGQQLN SLPSSNPQQK PFIVPKQEVA EGNGNLLVAR HQQQVVYDQL YKATELVLAG  420
NFSHAQGILA RLNHQLSPAV KPFQRAAFYF KEALQLLLLL PNRAISPSLR IPTPLDGIFK  480
MGAYKMLSEV SPLIQFKNFT SNQALLEALD DAANIHIIDF DIGCGAQWSS FMQELPRKNR  540
GATSLKITAF ASPSAYHSVE ISLMHESLTH FANDLGIKFE LEVVNFDSFD PSGYSASSFR  600
SSESDTIAVN FPLWSVSSRP TILPSLLCFI KQLSPKIVIM LDHGCERFEL PPSHHLLNAL  660
QYYEVFLDSV DAANMASDAV NKIERFLIQP TVESIVFGRL QSPNQIPPWT NLFASAGFSS  720
VPISNFAETQ AECVVKRSQV RGFHVEKRQA SLVLSWQRRE LLSASVWKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.18e-96GRAS family protein