PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027080696.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ARR-B

Protein Properties

Length: 586aa MW: 65160.9 Da PI: 6.1385

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027080696.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89	4.3e-28	343	396	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +++WtpeLH++Fv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQkYR++ XP_027080696.1 343 SKVDWTPELHKKFVQAVEQL-GIDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 396 6899**************.******************************96 PP
2	Myb_DNA-binding	44.5	3.4e-14	345	394	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT+e+++++v+av+qlG + +++I + m +g+t+ ++ s++qky+ XP_027080696.1 345 VDWTPELHKKFVQAVEQLGIDqaIPSRILELMKvEGLTRHNVASHLQKYR 394 57***********************************************7 PP
3	Response_reg	34.5	1e-12	52	157	2	109
EEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS Response_reg 2 livdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 l+++ + + +r le+ +y +v + + eal + +k +++ ++ ++ +++G+ +k +++++ +lp i++++++ +++ +++ +Ga XP_027080696.1 52 LLIESDACSAVEMRLKLEEMDY-IVSIFCNENEALSAISNKSecFHVAIVEVNTQNSSGI--FKFLETAN-DLPTIMISDNNCISTMMKCIALGA 142 666666666667778889**.***********999999*********995..78888877.9******************* PP SEEEESS--HHHHHH CS Response_reg 95 kdflsKpfdpeelvk 109 +fl Kp++ ++l + XP_027080696.1 143 VEFLQKPVSDDKLQN 157 ********99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence
MFDPKFLMHL VLSLSCFRSQ KCCKKDDAMP AMVCTADELL GWKDFPKGLK VLLIESDACS 60 AVEMRLKLEE MDYIVSIFCN ENEALSAISN KSECFHVAIV EVNTQNSSGI FKFLETANDL 120 PTIMISDNNC ISTMMKCIAL GAVEFLQKPV SDDKLQNIWQ HVVHKQAFNA GGKDVSEALK 180 PVKESLISML QLPFGNAETG KQASVEAEQE NNQDLLSGCD KYPAPSTPQL KQGERSLDDG 240 DCQDQANFSM EQDSAEQDGE CKSVETTCGN SIFECTALGS PASGEDAVKE EHESTNCCRT 300 EINTTTCYEG KDRPSNKTSN AAGLNRSSAV RDTCGIKASK KRSKVDWTPE LHKKFVQAVE 360 QLGIDQAIPS RILELMKVEG LTRHNVASHL QKYRMHRRHI LPKENERRWP HPGGSAQRNY 420 YPHKPVMAFP PYHPNHTIPG GQVYPAWIPP GTYTGGIHIW GSPYYPGWQV PNESWYWKPY 480 SVTHADAWGC PVMPQTVGSY PQFAQQTAPD FQTTKEMQYT GSTLLNPSDL HAAEEVIDQV 540 VKEAISKPWL PLPLGLKPPS TECVLNELSK QGISKIPPHT NAPNIR

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence

MFDPKFLMHL VLSLSCFRSQ KCCKKDDAMP AMVCTADELL GWKDFPKGLK VLLIESDACS  60
AVEMRLKLEE MDYIVSIFCN ENEALSAISN KSECFHVAIV EVNTQNSSGI FKFLETANDL  120
PTIMISDNNC ISTMMKCIAL GAVEFLQKPV SDDKLQNIWQ HVVHKQAFNA GGKDVSEALK  180
PVKESLISML QLPFGNAETG KQASVEAEQE NNQDLLSGCD KYPAPSTPQL KQGERSLDDG  240
DCQDQANFSM EQDSAEQDGE CKSVETTCGN SIFECTALGS PASGEDAVKE EHESTNCCRT  300
EINTTTCYEG KDRPSNKTSN AAGLNRSSAV RDTCGIKASK KRSKVDWTPE LHKKFVQAVE  360
QLGIDQAIPS RILELMKVEG LTRHNVASHL QKYRMHRRHI LPKENERRWP HPGGSAQRNY  420
YPHKPVMAFP PYHPNHTIPG GQVYPAWIPP GTYTGGIHIW GSPYYPGWQV PNESWYWKPY  480
SVTHADAWGC PVMPQTVGSY PQFAQQTAPD FQTTKEMQYT GSTLLNPSDL HAAEEVIDQV  540
VKEAISKPWL PLPLGLKPPS TECVLNELSK QGISKIPPHT NAPNIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.3	1e-147	ARR-B family protein