PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027080669.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 380aa MW: 41634.6 Da PI: 7.5035

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027080669.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	7	29	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C++sF++ L H+r+H XP_027080669.1 7 HKCKLCSRSFPSGRALGGHMRSH 29 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MVRPERHKCK LCSRSFPSGR ALGGHMRSHL ANLPLPPKTP QKQETSSQLP PQPGGDGSTE 60 STTSSDCSLS EGEVVVVQVK ECAAEDKGLV YGLRENPKKS FRMVDRQFLD GGSVVVQDRG 120 SETESTRKPT RRRSKRTRRM LVSAAEQEGA DEALIKEKKM MKTTESLLEL EQPVSSVSDT 180 SPEEDLALCL IMLSRDVWRR TSTTTTTSYD SAEELKLLNS STKRRHQKQK KIKINNNDSS 240 SGQEGESSEE LELPRNGVSR SCSIKNVTVD KKVHECPFCG KVYGSGQALG GHKRSHFLGS 300 STTLTTTTTA ATTAAAAAAA AESLLLESSS NSAKSQQGTL LMIDLNLPAP MEDEDIDDDH 360 PHESEDINLH HRRGFCSFRC

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MVRPERHKCK LCSRSFPSGR ALGGHMRSHL ANLPLPPKTP QKQETSSQLP PQPGGDGSTE  60
STTSSDCSLS EGEVVVVQVK ECAAEDKGLV YGLRENPKKS FRMVDRQFLD GGSVVVQDRG  120
SETESTRKPT RRRSKRTRRM LVSAAEQEGA DEALIKEKKM MKTTESLLEL EQPVSSVSDT  180
SPEEDLALCL IMLSRDVWRR TSTTTTTSYD SAEELKLLNS STKRRHQKQK KIKINNNDSS  240
SGQEGESSEE LELPRNGVSR SCSIKNVTVD KKVHECPFCG KVYGSGQALG GHKRSHFLGS  300
STTLTTTTTA ATTAAAAAAA AESLLLESSS NSAKSQQGTL LMIDLNLPAP MEDEDIDDDH  360
PHESEDINLH HRRGFCSFRC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16610.1	1e-17	C2H2 family protein