PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027080579.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NAC

Protein Properties

Length: 459aa MW: 50456.7 Da PI: 5.8787

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027080579.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170	7.5e-53	16	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPt+eel+++yL+kkv++kk++l +vi++vd++k+ePwd+++ ++ + +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk + XP_027080579.1 16 VPPGFRFHPTEEELLHYYLRKKVASKKIDL-DVIRDVDLNKLEPWDIQErcRIGStPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVI 109 69**************************.9***********963433332456******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s +++ +g++ktLvfykgrap+g+k+dW+mheyrl XP_027080579.1 110 YS-NSKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 144 .9999***************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MPAEEMNLSV NGQSQVPPGF RFHPTEEELL HYYLRKKVAS KKIDLDVIRD VDLNKLEPWD 60 IQERCRIGST PQNDWYFFSH KDKKYPTGTR TNRATAAGFW KATGRDKVIY SNSKRIGMRK 120 TLVFYKGRAP HGQKSDWIMH EYRLDDNAAT NAHDIVVPTH ASSLVGDPTS AEEGWVVCRV 180 FKKKNYHKAV ESCQHSAASM DSRSFGYDSS ASGNDGILDR ILVYMGRTCK QENGAISSAT 240 TSHMFDSNDD SDSMLPMITN DPTNASSSAS ALISEGLLRA KFMHLPGLAD NNNNNNNSSS 300 LSQQEDCSFG ACEQSMSMND IIVSRETEPS VSCTMINGQD ANCSSINTPA TADDQDPKVG 360 GGLSDWVALD RLVASQLNGG QAAGDDEVFC FPLEQEHRGA YSTSNLRSSG TSSRSSSSRP 420 NHQETSQVLL YGMGNEVDFW SFARSSSSSS SDPLCHLSV

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MPAEEMNLSV NGQSQVPPGF RFHPTEEELL HYYLRKKVAS KKIDLDVIRD VDLNKLEPWD  60
IQERCRIGST PQNDWYFFSH KDKKYPTGTR TNRATAAGFW KATGRDKVIY SNSKRIGMRK  120
TLVFYKGRAP HGQKSDWIMH EYRLDDNAAT NAHDIVVPTH ASSLVGDPTS AEEGWVVCRV  180
FKKKNYHKAV ESCQHSAASM DSRSFGYDSS ASGNDGILDR ILVYMGRTCK QENGAISSAT  240
TSHMFDSNDD SDSMLPMITN DPTNASSSAS ALISEGLLRA KFMHLPGLAD NNNNNNNSSS  300
LSQQEDCSFG ACEQSMSMND IIVSRETEPS VSCTMINGQD ANCSSINTPA TADDQDPKVG  360
GGLSDWVALD RLVASQLNGG QAAGDDEVFC FPLEQEHRGA YSTSNLRSSG TSSRSSSSRP  420
NHQETSQVLL YGMGNEVDFW SFARSSSSSS SDPLCHLSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	1e-104	NAC family protein