PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027080507.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 327aa MW: 36516.2 Da PI: 6.9484

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027080507.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.6	2.9e-18	11	58	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd++lv++++++G g+W + ++ g++R++k+c++rw +yl XP_027080507.1 11 KGPWSIEEDQRLVEYIEKHGQGNWQALPKQAGLNRCGKSCRLRWTNYL 58 79********************************************97 PP
2	Myb_DNA-binding	53.1	7.6e-17	64	109	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE+ ++ ++kqlG++ W++Ia++++ +Rt++++k++w+++l XP_027080507.1 64 RGGFSAEEESAIIALHKQLGNK-WSRIAAHLP-RRTDNEIKNFWNTHL 109 7889****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MVRPPEKGVK KGPWSIEEDQ RLVEYIEKHG QGNWQALPKQ AGLNRCGKSC RLRWTNYLRP 60 GIKRGGFSAE EESAIIALHK QLGNKWSRIA AHLPRRTDNE IKNFWNTHLK KKLLRSGIDP 120 TTHKPIPDFS LLNLSQAQLL SVSDLHNFIN PLDAALNLQA NANDLIKFQL LKNMMQAINP 180 NPLPYIQGNT NLADLIQLNR LFDGTNTDFT VDPLQAQSMN TSFCNISPLL NQQQTSTSHS 240 LPCLDGQITP GPILGDGFNV SSNMYNSEYS LPSLVSATPE SSIINPFESF KHSSIPAEAP 300 EQSNVFDDWN SLVNDEASSS FWKDVLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	3e-69	MYB family protein