PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027080305.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 307aa MW: 34085.9 Da PI: 9.0278

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027080305.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.1	7.6e-14	109	160	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr l+P++ + ++ + a+i+ A+e++k+L+ XP_027080305.1 109 QRMTHIAVERNRRKQMNEHLAVLRALMPES---YVQRGDQASIVGGAIEFVKELE 160 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence
MMALEALSSN ELLNFIIYDT ISATPFSSND SNNSCHENST NFLLDNGGLK TDNCGGAEAG 60 GGLENCSCMP PPPPPVQSQR QQNSLAVQGR KKRRRRQRVC KNKEEAETQR MTHIAVERNR 120 RKQMNEHLAV LRALMPESYV QRGDQASIVG GAIEFVKELE HHLQSLEAQR FLLLQQHGGA 180 NDKTTTTMAA AIATATGNKC FPPAPTPFAQ FFAYPQYTCS AQLPNKYTSK SKAAIADIEV 240 TLIETHANVR ILSRRRVRQL SKMVTGLQTL YLTILHLNIT TLDPLVLYSI SAKDTVIDPY 300 LILKKND

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	97	GRKKRRRRQ
2	90	96	RKKRRRR
3	91	96	KKRRRR
4	110	121	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	2e-58	bHLH family protein