PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027080274.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 962aa MW: 105956 Da PI: 4.853

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027080274.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.2	4.4e-19	37	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEde+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l XP_027080274.1 37 RGQWTPEEDEILRQAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83 89***************************9.**********986 PP
2	Myb_DNA-binding	66	7e-21	89	135	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+++++v+++G++ W+tIa++++ gR +kqc++rw+++l XP_027080274.1 89 KGPWSKEEDEIIIELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135 79****************************.***********97 PP
3	Myb_DNA-binding	46.6	7.7e-15	141	183	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT++E++ l++a++ +G++ W+ + ++ gRt++ +k++w+ XP_027080274.1 141 KEAWTQDEELALIRAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 183 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 962 aa Download sequence
MESDRTSTTR SDGGSDSLPR VRPAHGRTSG PTRRSTRGQW TPEEDEILRQ AVQRFKGKNW 60 KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVNKYGPK KWSTIAQHLP 120 GRIGKQCRER WHNHLNPGIN KEAWTQDEEL ALIRAHQIYG NKWAELTKFL PGRTDNAIKN 180 HWNSSVKKKL DSYLASGLLA QFQGLPNAIH PNQSAAAASS KTQQSSEDDS VPRDGGEMED 240 VSQCSQGSTA VGCSSSTSEM ANTNVYARED CFEHNLQDWD PSIGKDWQLT QNELPDMSSL 300 DLGQEASGQF MLSSSGQFIH ELVNFPLQSS MGLSNSTSMV NMVLGSDKPD QFLTTEVGCS 360 RIVYPEVRND GSFAPESSPV NEATDSLLYQ TSSYHVTFPS QSCNPLQSDV LGTSFGEPFS 420 VPSQLPSDDG SLIFNIDPNL FNDSSVGNSE KECVTVQPVE GKDSAKLVPV NDFGLTPPKD 480 IQTSPPVEEH PIISDEQKDS GALFYEPPRF PSLDVPFFSC DLIQSGNDMQ QEYSPLGIRQ 540 LMMSSVNCLT PFRLWDSPSG DDSPDAVLRS AAKTFTCTPS ILKKRHRDLV SPLSEKRCEK 600 KLESDVNQES FSTLTRDFSR LDVMFDETQN ENQSMLSPTN QGSNCEMLLT EDKENLVPAT 660 TEGDKEDVKV DSPSSANIVL EKHTNANFPL DKMNQPSGVL VEHDMNDTLF FSPDRCGTTS 720 DKAFGLSAKA CGNKYSGRLD AGLHKGAASS ETRCLSIVCS PRISGKKDGL NVVTTASMQL 780 ASSSTPMGKK VETSGNICGV ENISIFGETP FRRSIESPSA WKSPWFFNTF LPGPRVDTDI 840 TIEDIEYLMS PGDRSYDALG LMKQLSEHTA SAFANAQEVL GDETPETILK KSSKILNADK 900 QQNDLLKCQQ EHHSTVGSNV MTECRTLDFS ECGTPGKGVE TGKLSTGVSF SSPSSYLLKG 960 CR

Sequence ? help Back to Top

Protein Sequence Length: 962 aa Download sequence

MESDRTSTTR SDGGSDSLPR VRPAHGRTSG PTRRSTRGQW TPEEDEILRQ AVQRFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVNKYGPK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPGIN KEAWTQDEEL ALIRAHQIYG NKWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DSYLASGLLA QFQGLPNAIH PNQSAAAASS KTQQSSEDDS VPRDGGEMED  240
VSQCSQGSTA VGCSSSTSEM ANTNVYARED CFEHNLQDWD PSIGKDWQLT QNELPDMSSL  300
DLGQEASGQF MLSSSGQFIH ELVNFPLQSS MGLSNSTSMV NMVLGSDKPD QFLTTEVGCS  360
RIVYPEVRND GSFAPESSPV NEATDSLLYQ TSSYHVTFPS QSCNPLQSDV LGTSFGEPFS  420
VPSQLPSDDG SLIFNIDPNL FNDSSVGNSE KECVTVQPVE GKDSAKLVPV NDFGLTPPKD  480
IQTSPPVEEH PIISDEQKDS GALFYEPPRF PSLDVPFFSC DLIQSGNDMQ QEYSPLGIRQ  540
LMMSSVNCLT PFRLWDSPSG DDSPDAVLRS AAKTFTCTPS ILKKRHRDLV SPLSEKRCEK  600
KLESDVNQES FSTLTRDFSR LDVMFDETQN ENQSMLSPTN QGSNCEMLLT EDKENLVPAT  660
TEGDKEDVKV DSPSSANIVL EKHTNANFPL DKMNQPSGVL VEHDMNDTLF FSPDRCGTTS  720
DKAFGLSAKA CGNKYSGRLD AGLHKGAASS ETRCLSIVCS PRISGKKDGL NVVTTASMQL  780
ASSSTPMGKK VETSGNICGV ENISIFGETP FRRSIESPSA WKSPWFFNTF LPGPRVDTDI  840
TIEDIEYLMS PGDRSYDALG LMKQLSEHTA SAFANAQEVL GDETPETILK KSSKILNADK  900
QQNDLLKCQQ EHHSTVGSNV MTECRTLDFS ECGTPGKGVE TGKLSTGVSF SSPSSYLLKG  960
CR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	0.0	MYB family protein