PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027080273.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 987aa MW: 108694 Da PI: 4.8339

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027080273.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.2	4.6e-19	37	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEde+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l XP_027080273.1 37 RGQWTPEEDEILRQAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83 89***************************9.**********986 PP
2	Myb_DNA-binding	65.9	7.2e-21	89	135	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+++++v+++G++ W+tIa++++ gR +kqc++rw+++l XP_027080273.1 89 KGPWSKEEDEIIIELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135 79****************************.***********97 PP
3	Myb_DNA-binding	46.6	7.9e-15	141	183	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT++E++ l++a++ +G++ W+ + ++ gRt++ +k++w+ XP_027080273.1 141 KEAWTQDEELALIRAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 183 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 987 aa Download sequence
MESDRTSTTR SDGGSDSLPR VRPAHGRTSG PTRRSTRGQW TPEEDEILRQ AVQRFKGKNW 60 KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVNKYGPK KWSTIAQHLP 120 GRIGKQCRER WHNHLNPGIN KEAWTQDEEL ALIRAHQIYG NKWAELTKFL PGRTDNAIKN 180 HWNSSVKKKL DSYLASGLLA QFQGLPNAIH PNQSAAAASS KTQQSSEDDS VPRDGGEMED 240 VSQCSQGSTA VGCSSSTSEM ANTNVYARED CFEHNLQDWD PSIGKDWQLT QNELPDMSSL 300 DLGQEASGQF MLSSSGQFIH ELVNFPLQSS MGLSNSTSMV NMVLGSDKPD QFLTTEVGCS 360 RIVYPEVRND GSFAPESSPV NEATDSLLYQ TSSYHVTFPS QSCNPLQSDV LGTSFGEPFS 420 VPSQLPSDDG SLIFNIDPNL FNDSSVGNSE KECVTGRYDG FIYCNDSGGS TNNHTEFGML 480 VQPVEGKDSA KLVPVNDFGL TPPKDIQTSP PVEEHPIISD EQKDSGALFY EPPRFPSLDV 540 PFFSCDLIQS GNDMQQEYSP LGIRQLMMSS VNCLTPFRLW DSPSGDDSPD AVLRSAAKTF 600 TCTPSILKKR HRDLVSPLSE KRCEKKLESD VNQESFSTLT RDFSRLDVMF DETQNENQSM 660 LSPTNQGSNC EMLLTEDKEN LVPATTEGDK EDVKVDSPSS ANIVLEKHTN ANFPLDKMNQ 720 PSGVLVEHDM NDTLFFSPDR CGTTSDKAFG LSAKACGNKY SGRLDAGLHK GAASSETRCL 780 SIVCSPRISG KKDGLNVVTT ASMQLASSST PMGKKVETSG NICGVENISI FGETPFRRSI 840 ESPSAWKSPW FFNTFLPGPR VDTDITIEDI EYLMSPGDRS YDALGLMKQL SEHTASAFAN 900 AQEVLGDETP ETILKKSSKI LNADKQQNDL LKCQQEHHST VGSNVMTECR TLDFSECGTP 960 GKGVETGKLS TGVSFSSPSS YLLKGCR

Sequence ? help Back to Top

Protein Sequence Length: 987 aa Download sequence

MESDRTSTTR SDGGSDSLPR VRPAHGRTSG PTRRSTRGQW TPEEDEILRQ AVQRFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVNKYGPK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPGIN KEAWTQDEEL ALIRAHQIYG NKWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DSYLASGLLA QFQGLPNAIH PNQSAAAASS KTQQSSEDDS VPRDGGEMED  240
VSQCSQGSTA VGCSSSTSEM ANTNVYARED CFEHNLQDWD PSIGKDWQLT QNELPDMSSL  300
DLGQEASGQF MLSSSGQFIH ELVNFPLQSS MGLSNSTSMV NMVLGSDKPD QFLTTEVGCS  360
RIVYPEVRND GSFAPESSPV NEATDSLLYQ TSSYHVTFPS QSCNPLQSDV LGTSFGEPFS  420
VPSQLPSDDG SLIFNIDPNL FNDSSVGNSE KECVTGRYDG FIYCNDSGGS TNNHTEFGML  480
VQPVEGKDSA KLVPVNDFGL TPPKDIQTSP PVEEHPIISD EQKDSGALFY EPPRFPSLDV  540
PFFSCDLIQS GNDMQQEYSP LGIRQLMMSS VNCLTPFRLW DSPSGDDSPD AVLRSAAKTF  600
TCTPSILKKR HRDLVSPLSE KRCEKKLESD VNQESFSTLT RDFSRLDVMF DETQNENQSM  660
LSPTNQGSNC EMLLTEDKEN LVPATTEGDK EDVKVDSPSS ANIVLEKHTN ANFPLDKMNQ  720
PSGVLVEHDM NDTLFFSPDR CGTTSDKAFG LSAKACGNKY SGRLDAGLHK GAASSETRCL  780
SIVCSPRISG KKDGLNVVTT ASMQLASSST PMGKKVETSG NICGVENISI FGETPFRRSI  840
ESPSAWKSPW FFNTFLPGPR VDTDITIEDI EYLMSPGDRS YDALGLMKQL SEHTASAFAN  900
AQEVLGDETP ETILKKSSKI LNADKQQNDL LKCQQEHHST VGSNVMTECR TLDFSECGTP  960
GKGVETGKLS TGVSFSSPSS YLLKGCR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	0.0	MYB family protein