PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027080135.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 572aa MW: 63796.2 Da PI: 8.2111

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027080135.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.4	7e-18	57	100	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEd ll+++vk++ g++Wk+Ia++m gRt+ qc +rwqk+l XP_027080135.1 57 WTDEEDNLLAEVVKRFNGRNWKRIAECMT-GRTDVQCLHRWQKVL 100 **************************9.**********986 PP
2	Myb_DNA-binding	64.4	2.1e-20	106	152	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+++++v+++G+++W+ Ia++++ gR +kqc++rw+++l XP_027080135.1 106 KGPWTKEEDEQIIQLVEKFGSKRWSVIAKYLP-GRIGKQCRERWHNHL 152 79****************************.***********97 PP
3	Myb_DNA-binding	51.5	2.3e-16	158	200	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ +l +++ +G++ W+ Iar ++ gRt++ +k++w+ XP_027080135.1 158 KDAWTEEEEAILSYYHQIYGNK-WAEIARFLP-GRTDNAIKNHWN 200 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence
MVEFTCCPDL VKEVGFGSCS SASDSSYDCV TPRYSSDSSF TSQTSSFSTR RSSQAGWTDE 60 EDNLLAEVVK RFNGRNWKRI AECMTGRTDV QCLHRWQKVL NPELVKGPWT KEEDEQIIQL 120 VEKFGSKRWS VIAKYLPGRI GKQCRERWHN HLDPAIKKDA WTEEEEAILS YYHQIYGNKW 180 AEIARFLPGR TDNAIKNHWN CSAKKKFDLN LPCCSELDSQ GSTSDGSCIT QKRTSSIEHQ 240 LLSQKVRERS GLQERGQDNV AHVCSTELSL GNTIFHMDHL ESKTHLHGTW RSSDKGVGNL 300 INSLGRFKVG GTEIVPADMH GNPSPGYAFS SAVPPAKCER IFESPERIFE SPKRTRHVSG 360 LLPNTDLLSL SSYGYSKDHG QLSKKNKVCK TTPCQDHWLS SFLCYDPPQC QDLVSAESDG 420 IISLDNHTNH SKHRLLYFTP PSLVLNISGN GSSSPESLLR NSAMGYKNTP SIIRKKISRE 480 ARDEASCCKN PRNTTSSSSQ SKEINSTGSS KLEGTSVSNT YKSETSVAGR SLERRLDFAS 540 DREWESTAVR FSTPICASSS ALNSGGKMNL TP

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence

MVEFTCCPDL VKEVGFGSCS SASDSSYDCV TPRYSSDSSF TSQTSSFSTR RSSQAGWTDE  60
EDNLLAEVVK RFNGRNWKRI AECMTGRTDV QCLHRWQKVL NPELVKGPWT KEEDEQIIQL  120
VEKFGSKRWS VIAKYLPGRI GKQCRERWHN HLDPAIKKDA WTEEEEAILS YYHQIYGNKW  180
AEIARFLPGR TDNAIKNHWN CSAKKKFDLN LPCCSELDSQ GSTSDGSCIT QKRTSSIEHQ  240
LLSQKVRERS GLQERGQDNV AHVCSTELSL GNTIFHMDHL ESKTHLHGTW RSSDKGVGNL  300
INSLGRFKVG GTEIVPADMH GNPSPGYAFS SAVPPAKCER IFESPERIFE SPKRTRHVSG  360
LLPNTDLLSL SSYGYSKDHG QLSKKNKVCK TTPCQDHWLS SFLCYDPPQC QDLVSAESDG  420
IISLDNHTNH SKHRLLYFTP PSLVLNISGN GSSSPESLLR NSAMGYKNTP SIIRKKISRE  480
ARDEASCCKN PRNTTSSSSQ SKEINSTGSS KLEGTSVSNT YKSETSVAGR SLERRLDFAS  540
DREWESTAVR FSTPICASSS ALNSGGKMNL TP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	350	355	ESPKRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	2e-77	MYB family protein