PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027080000.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 324aa    MW: 35315 Da    PI: 9.6953
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027080000.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07265306443
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      W++ Ed+ l++a k ++++   +W++Ia+ ++ g+t   c  r
   XP_027080000.1 265 WSAGEDLALLNALKSFPKDvamRWEKIAAAVP-GKTKAACMKR 306
                      ********************************.*******887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MEFLDEDARP RFVLQSKPTP EPAQSSQDPP SLRKPTLFIS LTVSALFLAL SFLYFTLDPF  60
QSLFIWFSLS LLVGPFAPLS LTAGDIRVGL GPPLPEPTKE TEISDEVSKR SGRRSVKSTR  120
RQDGSGNGSG STRPDYGWEA VEQNGLSVNG NGSVAKFEKS GGKVVNEEVQ WDAGDDELLK  180
KLMGKHPVGK PGRWEAVAEG FKGRHSVDSV IKRSKEMGEK KVSDEDSYKK FLKDRKPVDR  240
RIEGGNESHV GGLQSVEAKG DSSGWSAGED LALLNALKSF PKDVAMRWEK IAAAVPGKTK  300
AACMKRVAEL KKDFRSSKAA SSEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.16e-69MYB_related family protein