PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027079968.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 317aa MW: 34970.2 Da PI: 7.4437

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027079968.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.5	1.1e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed l+d++k +G g W++ +++ g++R++k+c++rw++yl XP_027079968.1 14 KGAWTPSEDTMLIDYIKSHGQGKWRSLPKRAGLKRCGKSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	47.1	5.4e-15	71	111	5	47
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_027079968.1 71 TDDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNFWNTN 111 89**************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
MGRTPCCAKE GLKKGAWTPS EDTMLIDYIK SHGQGKWRSL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNK TDDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNFWNT NLAKKIGGPQ 120 HLAAEPSSST TRSRAAPVLQ NPTSTHQPSN TEKLEGSPTH VVRTKARRLT KGFINVDLQT 180 SCTQQQPGII MAPSGAAAKD DFSEARTTDN GEKVGPDPAS GAFSGKGGYY SSDFVMDFEM 240 DDDFLSDFLN KDFVGFEQDF PQVLANGTCV ETNGEANDFS PNCCPKPLSQ VDRNDHGDLG 300 SMPTLLDTAL AWLNEDH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	5e-63	MYB family protein