PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027079924.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 723aa MW: 82729.1 Da PI: 5.8971

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027079924.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.8	1.4e-21	97	185	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fY++Y+k vGF+vrk+++k+ +++ ++ r +vCs+eg++e++ + ++++ +++ +r+gC a+++vk ek +gk++v+ +++eHnHela XP_027079924.1 97 FYETYSKLVGFTVRKTYTKRD-KDNVVIYRGWVCSREGFPENRINIWDRRQVPKPGSRVGCLASFRVKHEKkSGKYVVSGFVKEHNHELA 185 9*************99998.5556999************9999999*************999**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence
MDAAARSACE HANVDLSDNG NGVGDSSDDN RRNVEDNEIN IDAENINGSK SGGAEPHTEN 60 DNTREVSWVE LDKGLDELTE KEVFKLKFDC DEEAGMFYET YSKLVGFTVR KTYTKRDKDN 120 VVIYRGWVCS REGFPENRIN IWDRRQVPKP GSRVGCLASF RVKHEKKSGK YVVSGFVKEH 180 NHELAAPIAV PYLQPQKRAR TVTVELGFTK KDIEHVQATS DIHDVDNRVL THSVLAYLCA 240 KNDYDPGLFY KYDVDDEKQL FSIFWADSKS RADYAFFGDV LALNTKFRKN AYGKPFIILA 300 GLNNHYQTTV FGCALLGDET AETYVWLLET FLDAMNHKAP VSVITDGDKA IEEAIEKIFP 360 TSQHRICHWH LYKDAVAIAG DSSFGPDFKK CMEENLNPDE FEVAWIKLMK KYGLQGHPWF 420 EEIYSRRTKW AEAYLREHFF AGLSSIQGHG MNTYFTRFLQ VQLKLHEFVR YFDNALVHLR 480 EDEAKADSES ESTCPAFCTI LRDLERHAAD VFTKSIFLKV REQIMGDAML ILSNKEYLKD 540 EACWVYRFSE YMKPDMIWKV RYHPTNQSLT CSCFKLIKDG LPCCHMISVI KAEQLREFPR 600 CCINKRWMKR ARSEIDSGID IQSLNMATEV ARFRILNSTC SEMNYYASQT LQGFNKARNL 660 ISKFTSDVKQ IYNSKGEVDE PSPEVSEDAD GSTSRSGMHD PNGQCDASEV ERPRPDDCSP 720 AQS

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence

MDAAARSACE HANVDLSDNG NGVGDSSDDN RRNVEDNEIN IDAENINGSK SGGAEPHTEN  60
DNTREVSWVE LDKGLDELTE KEVFKLKFDC DEEAGMFYET YSKLVGFTVR KTYTKRDKDN  120
VVIYRGWVCS REGFPENRIN IWDRRQVPKP GSRVGCLASF RVKHEKKSGK YVVSGFVKEH  180
NHELAAPIAV PYLQPQKRAR TVTVELGFTK KDIEHVQATS DIHDVDNRVL THSVLAYLCA  240
KNDYDPGLFY KYDVDDEKQL FSIFWADSKS RADYAFFGDV LALNTKFRKN AYGKPFIILA  300
GLNNHYQTTV FGCALLGDET AETYVWLLET FLDAMNHKAP VSVITDGDKA IEEAIEKIFP  360
TSQHRICHWH LYKDAVAIAG DSSFGPDFKK CMEENLNPDE FEVAWIKLMK KYGLQGHPWF  420
EEIYSRRTKW AEAYLREHFF AGLSSIQGHG MNTYFTRFLQ VQLKLHEFVR YFDNALVHLR  480
EDEAKADSES ESTCPAFCTI LRDLERHAAD VFTKSIFLKV REQIMGDAML ILSNKEYLKD  540
EACWVYRFSE YMKPDMIWKV RYHPTNQSLT CSCFKLIKDG LPCCHMISVI KAEQLREFPR  600
CCINKRWMKR ARSEIDSGID IQSLNMATEV ARFRILNSTC SEMNYYASQT LQGFNKARNL  660
ISKFTSDVKQ IYNSKGEVDE PSPEVSEDAD GSTSRSGMHD PNGQCDASEV ERPRPDDCSP  720
AQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-88	FAR1 family protein