PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027079716.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 198aa MW: 21231.4 Da PI: 4.5837 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.9 | 3.8e-16 | 21 | 68 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +++g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++ a+ +l+g XP_027079716.1 21 YRGIR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAAIALKG 68 99**6..678*********843...5***********************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence |
MSSTSSSGSP SRPSGGKHPM YRGIRSRSGK WVSEIREPRK TTRIWLGTYP TPEMAAAAYD 60 VAAIALKGSD IVLNFPDRVS SYPAPASPSP SDIRSAAAGA AEMMKEKTAG GGHDGDDDGK 120 FPHDQNQPGS SDHQELAFDQ DRGLAGEDEF IDVEALIDMP NLLVDMAEGM LVSPPRIHSP 180 PSSDSPEHSD VDSLWSYF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 2e-31 | ERF family protein |