PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027078876.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 650aa MW: 73980.8 Da PI: 7.2182

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027078876.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.5	1.5e-08	461	502	2	40
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 ++W++eE ell ++ +++++g +W+ I++++g+gR+ +++ XP_027078876.1 461 KPWSKEEIELLRKGMQKYPKGtsrRWEVISEYIGTGRSVEEI 502 69***********************************99876 PP
2	Myb_DNA-binding	25.6	2.8e-08	593	637	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W++ + lv+a k ++++ +W+++a+ ++ g+t qck ++ XP_027078876.1 593 VWSAVQERALVQALKTFPKEtnqRWERVAAAVP-GKTVVQCKKKFA 637 6******************************.******9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence
MAATSSMRLI SYAEEIIDGQ AVYVSSNSSP VKAFNFEPAG HAFHSAALRL SGVLEDDDND 60 NDDEKSDTTS DKDQSYTQTS ESYSTKGKKK SGSGEKQQDH YALLGLGHLR YLATEDQIRR 120 SYREAALRHH PDKQAALLLA EETEAAKQAK KDEIENHFKA IQEAYEVLID PTRRRIYDST 180 DEFDDEIPTD CAPQDFFKVF GPAFLRNGRW SVSQPIPSLG DETTPLKEVD NFYNFWYSFK 240 SWREFPHADE FDLEQAESRD HRRWMERQNA KLSEKARKEE SARIRALVDN AYKRDPRILR 300 RKEEEKAEKQ RKKEAKILAK KLQEEEAARI AEEERLRKEE EDKRAAEAAL HQKKVREKEK 360 KLLRKERTRL RTLLAPLLSC DLLEEDVEKL CMSLDMGHLR NLCNKIEENE DVQRVKIVKD 420 ALGHGHNSKD EKEDVKGALR NGAALEANGQ FPLGTKEKIE KPWSKEEIEL LRKGMQKYPK 480 GTSRRWEVIS EYIGTGRSVE EILKATKTVL LQKPDSAKAF DSFLEKRKPA PSIASPLTTR 540 EEVEGVSNGN ASQKHAGKPD NLQDSSSQTA NQQNSDVAVS AENGVSSTGD QDVWSAVQER 600 ALVQALKTFP KETNQRWERV AAAVPGKTVV QCKKKFALLK ESFRNKKSAV

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence

MAATSSMRLI SYAEEIIDGQ AVYVSSNSSP VKAFNFEPAG HAFHSAALRL SGVLEDDDND  60
NDDEKSDTTS DKDQSYTQTS ESYSTKGKKK SGSGEKQQDH YALLGLGHLR YLATEDQIRR  120
SYREAALRHH PDKQAALLLA EETEAAKQAK KDEIENHFKA IQEAYEVLID PTRRRIYDST  180
DEFDDEIPTD CAPQDFFKVF GPAFLRNGRW SVSQPIPSLG DETTPLKEVD NFYNFWYSFK  240
SWREFPHADE FDLEQAESRD HRRWMERQNA KLSEKARKEE SARIRALVDN AYKRDPRILR  300
RKEEEKAEKQ RKKEAKILAK KLQEEEAARI AEEERLRKEE EDKRAAEAAL HQKKVREKEK  360
KLLRKERTRL RTLLAPLLSC DLLEEDVEKL CMSLDMGHLR NLCNKIEENE DVQRVKIVKD  420
ALGHGHNSKD EKEDVKGALR NGAALEANGQ FPLGTKEKIE KPWSKEEIEL LRKGMQKYPK  480
GTSRRWEVIS EYIGTGRSVE EILKATKTVL LQKPDSAKAF DSFLEKRKPA PSIASPLTTR  540
EEVEGVSNGN ASQKHAGKPD NLQDSSSQTA NQQNSDVAVS AENGVSSTGD QDVWSAVQER  600
ALVQALKTFP KETNQRWERV AAAVPGKTVV QCKKKFALLK ESFRNKKSAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11450.1	0.0	MYB family protein