PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027078850.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 497aa MW: 54207.9 Da PI: 7.0604

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027078850.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.6	4.4e-16	68	112	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT++E++++++a k++G W++I +++g ++t+ q++s+ qk+ XP_027078850.1 68 RERWTEDEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 112 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MVAASMALQD DSGSTDSETT LPMVIGNKMP LDMEVSSVRS IQLTGQFQPG GDDYAQKVRK 60 PYTITKQRER WTEDEHKKFL EALKLYGRAW RRIEEHVGTK TAVQIRSHAQ KFFSKVVRES 120 NNGDSGSVKP IEIPPPRPKR KPLHPYPRKL SASVKSGALA LEKQSAAANI CSPTEANQSP 180 TSVLSAFGSD APGVTDSSTP EGSLSPVSSV IGGSSGFVLS EPPNLSPPKA NASPSSSQVN 240 NCSNQDEKLP LKLELFPEDN CFVKEGSEEV SSTQCLKLFG KTVMVTDSCR PSSPTPLTCK 300 MQPPSHSDGK LAQALPWNFV PIKYSQGDLE RSWGALPFGT HATLFCLPLG GERSKPSETT 360 PPSSLQWWTY QGGASFPFVR IHSPIPIKAS CFGDQRDVQD MEIQKDGSSS DSNAECECAE 420 AESSRNLEAQ SCQFLFAKEE RAQASSTPCE TSFLELKAGS SKCTKGFVPY KRCLAERDAR 480 SVVNSEEREE QRIRLCL

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MVAASMALQD DSGSTDSETT LPMVIGNKMP LDMEVSSVRS IQLTGQFQPG GDDYAQKVRK  60
PYTITKQRER WTEDEHKKFL EALKLYGRAW RRIEEHVGTK TAVQIRSHAQ KFFSKVVRES  120
NNGDSGSVKP IEIPPPRPKR KPLHPYPRKL SASVKSGALA LEKQSAAANI CSPTEANQSP  180
TSVLSAFGSD APGVTDSSTP EGSLSPVSSV IGGSSGFVLS EPPNLSPPKA NASPSSSQVN  240
NCSNQDEKLP LKLELFPEDN CFVKEGSEEV SSTQCLKLFG KTVMVTDSCR PSSPTPLTCK  300
MQPPSHSDGK LAQALPWNFV PIKYSQGDLE RSWGALPFGT HATLFCLPLG GERSKPSETT  360
PPSSLQWWTY QGGASFPFVR IHSPIPIKAS CFGDQRDVQD MEIQKDGSSS DSNAECECAE  420
AESSRNLEAQ SCQFLFAKEE RAQASSTPCE TSFLELKAGS SKCTKGFVPY KRCLAERDAR  480
SVVNSEEREE QRIRLCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	2e-48	MYB_related family protein