PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027078774.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 270aa    MW: 30649.5 Da    PI: 4.5108
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027078774.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.62.2e-11106150347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rWT+eE++ ++ + k++G g+Wk I+++  ++R + q+ s+ qky
   XP_027078774.1 106 RWTEEEHLMFLVGLKRFGRGDWKNISKHCVTTRKPSQVASHGQKY 150
                      8****************************************9999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MEWSPEDDKL LENALAELDS SSPNSYEDGA DKIPWKSVDE SEELYQDHQA LARDTNLTEA  60
DNYYPMPLHT NDGVENPGAL KSGEETGSSS RKKQATKNDQ RQKTIRWTEE EHLMFLVGLK  120
RFGRGDWKNI SKHCVTTRKP SQVASHGQKY FRRQKSSTPE DKRRSSINDI IAIDPDFVVP  180
HYTFPSLERE IPSYSTSTGQ PEIALPSEPD RSYDVEELLN STEASTFQLE EFPPVDEAFF  240
EDPSFYFLPP DAAYPGATIN KENHGQGPKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.12e-33MYB_related family protein