PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027078264.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 306aa MW: 34546.5 Da PI: 5.4791 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.6 | 1.6e-14 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l ++ G g+W+ +ar g+ R++k+c++rw +yl XP_027078264.1 22 KGLWSPEEDDKLMNYMLTNGQGCWSDVARNAGLQRCGKSCRLRWINYL 69 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 6.8e-17 | 75 | 118 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+el+++++++lG++ W+ Ia++++ gRt++++k++w++ XP_027078264.1 75 RGAFSPQEEELIIHLHALLGNR-WSQIAARLP-GRTDNEIKNFWNS 118 89********************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence |
MRKPEPSVEK NNMSNSSVKL RKGLWSPEED DKLMNYMLTN GQGCWSDVAR NAGLQRCGKS 60 CRLRWINYLR PDLKRGAFSP QEEELIIHLH ALLGNRWSQI AARLPGRTDN EIKNFWNSTI 120 KKRLKNSSSP NTSDSSSIQE QSMMGMFVDL SSSASSSMHS MALTNMVDPL PMLEQSLSTS 180 GGTSAGSYFD PQSCIRQAAY DNPAFSTGNL EGQRSIFFPP LESGEVERSA ITTTNFVDRN 240 PTSNTVDNRS NMINYYGNNN YIKVENADGF GSYWEAEELR VKEWDLEELM KDASSFPLPD 300 FQKNNW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12870.1 | 9e-63 | MYB family protein |