PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027078229.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 263aa MW: 30426.4 Da PI: 10.0111

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027078229.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.8	3.1e-16	6	93	1	93
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 ffkvl + + +++l++p f+++++++ ++ l+++sg++W vk+ + ++ry +t+GW +Fv++ +L+ gD +vF l+ + s+f+ XP_027078229.1 6 FFKVL--VHDS-KSILRIPTLFVSRFEEI--LPQHALLKTKSGETWPVKI--VRIDERYCFTDGWPKFVNDLKLEIGDLLVFWLIiEArSSFKVA 93 77888..4444.456*********877..7778***********..****************************9875444666443 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
MDFPSFFKVL VHDSKSILRI PTLFVSRFEE ILPQHALLKT KSGETWPVKI VRIDERYCFT 60 DGWPKFVNDL KLEIGDLLVF WLIIEARSSF KVAIYGIRGC EKEFNSAATN HCPIKVEQAE 120 STELDLRSIR ILQPKPSDTG TTTYDAKRRK LKRNENPSCG AQKSFNSVED RRFTKVMAKH 180 HRYRLHVPLL FAEKTGLMGK TQVELRYQNG WSTNVVLKQS TKPHMLDMCA GWPEFRKKNR 240 LLCGKKCAFE YVPETGSIQV QLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	5e-16	B3 family protein