PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027078058.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 265aa    MW: 30652.4 Da    PI: 10.0353
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027078058.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.41.7e-151190186
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86
                    ffkvl+p   + s+ l++p  f +++++  +e     l+ +sg++W+vk+  ++ +++y++t+GW +Fvk++gLk g+f+vF l+ g
  XP_027078058.1 11 FFKVLVP--GFYSK-LSMPPLFWKTFEHLLAE--SALLQIKSGETWSVKI--ERIGEQYFFTDGWPKFVKDHGLKMGEFLVFWLVlG 90
                    6666633..44443.78899998888655344..58888899********..******************************97733 PP
2B339.69.1e-131812531287
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      + r+ +  +fa++hg+++++  +++l++++g sW+v+l+   ++ + ++ kGW +F + n L+ g    F+++ +
  XP_027078058.1 181 HRYRMNVKMPFAKKHGLVNKS--EVMLQNTNGASWRVELRLYDND-MLYMCKGWTDFLENNALELGQEYAFEFIPE 253
                     455788999*******99544..8***************655554.578888**************9999998753 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MTSKAKASPS FFKVLVPGFY SKLSMPPLFW KTFEHLLAES ALLQIKSGET WSVKIERIGE  60
QYFFTDGWPK FVKDHGLKMG EFLVFWLVLG KNNSTTIFEV AMYGTTGCDK DLNPSAPIHD  120
PRHFLPQLVD QPNPEINRNP LTQPSKSAVQ GSRKRKSKKI RYDKGSLDAG KYYTKVLANY  180
HRYRMNVKMP FAKKHGLVNK SEVMLQNTNG ASWRVELRLY DNDMLYMCKG WTDFLENNAL  240
ELGQEYAFEF IPETDSIRVQ PFKKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152157SRKRKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.12e-23B3 family protein