PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027077598.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ZF-HD
Protein Properties Length: 238aa    MW: 26644 Da    PI: 8.7494
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027077598.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer93.71.6e-2949104258
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     ++++Y eClkNhAa+ Ggha+DGCgEf+p  geegt++alkC+AC+CHRnFHR+  e
  XP_027077598.1  49 KALKYMECLKNHAAAAGGHATDGCGEFLPG-GEEGTIEALKCSACNCHRNFHRKVIE 104
                     5689*************************9.999********************876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MSIYWSQGIS AAEMNIDSQK GNENGKATVN FGAVSMHSSP EDHRLPNKKA LKYMECLKNH  60
AAAAGGHATD GCGEFLPGGE EGTIEALKCS ACNCHRNFHR KVIEGDCSSQ SYHSFFLVNG  120
EKLFTSAHQH NTTHQVTLAP PKVQLLQTSE KDEQEEGVHP EAKIRPHDAG KRRSRTKFSQ  180
EQKEKLWSFA EKVGWKIQKA DDSAVNGFCQ EIGIRRRVLK VWMHNNKHNL AKKNSYPC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.11e-55ZF-HD family protein