PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027077452.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 506aa MW: 56979.5 Da PI: 5.2445 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 359.2 | 6e-110 | 125 | 505 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 + Lle A+a+++++ +++q+l++ l+el+sp+gd+ q+la+yf++AL +r+++s++++y+al + ++++ + +++ +++ f+evsP+ +f+h++ XP_027077452.1 125 DILLETARAIADKNSSRVQQLMWMLNELSSPYGDTDQKLASYFLQALFSRMTDSGERCYRALVSASEKTCSFESTRKMVLKFQEVSPWTTFGHVA 219 679***********************************************************8777775554444455556************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg........skeeleetgerLakfAeelgvpfefnvlvak 184 +N aIleavege ++HiiD++ + ++QWp+Ll+aLa+R++++p+lR+T+v+ +++g ++ ++e+g+r++kfA+ +gvpf+fnvl++ XP_027077452.1 220 CNGAILEAVEGEPKLHIIDISNTFCTQWPTLLEALATRSDETPHLRLTTVVVSKAGaagggaagVQKVMKEIGSRMEKFARLMGVPFKFNVLHHA 314 **************************************************998888999***99999*************************777 PP GRAS 185 .rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleak 274 +l++l+l+eL++k++Eala+n+v +lh++ +l ++rd ++++++sl+P+++ vve+ead++ + +F+++f e+l+++ + f+sl+ + XP_027077452.1 315 gDLSELNLSELDIKEDEALAINCVGALHSVS----TLGNRRDFLISIFRSLQPRIMAVVEEEADLDVGfdgyDFVKGFQECLRWFRVYFESLDDS 405 7*****************************8....8999999********************99865555569********************** PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve..eesgslvlgWkdrpL 367 +p++s+er ++Er+ gr+iv++vac ae++er et+ +W++rl+++GF+pv++s+++ +++++llr++k dg+++ +es+ ++l Wkd+p+ XP_027077452.1 406 FPKTSNERLMLERQ-AGRAIVDLVACPAAESIERLETATRWSHRLHASGFGPVSFSDEVCDDVRALLRRYK-DGWSMAqcNESAGIFLSWKDQPV 498 **************.********************************************************.776666446778888******** PP GRAS 368 vsvSaWr 374 v++SaWr XP_027077452.1 499 VWASAWR 505 ******8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence |
MDTLFRLVSL QQPSDQSFNS SRTSSSSRSS RQNHHYNQHQ QQEEEEECFN FFMDDEDFSS 60 SSSRPHYNPY QQHQQQTSST PTPTTTNTSS TPTHHPYESA DFSFSPARDI NQEFASSFSG 120 KWASDILLET ARAIADKNSS RVQQLMWMLN ELSSPYGDTD QKLASYFLQA LFSRMTDSGE 180 RCYRALVSAS EKTCSFESTR KMVLKFQEVS PWTTFGHVAC NGAILEAVEG EPKLHIIDIS 240 NTFCTQWPTL LEALATRSDE TPHLRLTTVV VSKAGAAGGG AAGVQKVMKE IGSRMEKFAR 300 LMGVPFKFNV LHHAGDLSEL NLSELDIKED EALAINCVGA LHSVSTLGNR RDFLISIFRS 360 LQPRIMAVVE EEADLDVGFD GYDFVKGFQE CLRWFRVYFE SLDDSFPKTS NERLMLERQA 420 GRAIVDLVAC PAAESIERLE TATRWSHRLH ASGFGPVSFS DEVCDDVRAL LRRYKDGWSM 480 AQCNESAGIF LSWKDQPVVW ASAWRA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37650.1 | 0.0 | GRAS family protein |