PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027077418.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 282aa MW: 32430.4 Da PI: 9.5312

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027077418.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.7	1.2e-14	37	112	18	99
--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +p f++++ g++ k ++l+ +g+ W+v + + +++++++++GW+ F++ + Lk g+f+vF++dg+s f +vk+fr+ XP_027077418.1 37 VPPLFVKKFsGLV---CKRIKLRCIDGKIWDVDV--EETQEGVFMKNGWQAFADHHLLKLGEFLVFRYDGNSVF--TVKIFRT 112 5777888886666...357*************..******************************9..***996 PP
2	B3	40.1	6.5e-13	197	280	10	97
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 ++ + l+l+k f+++++++ + ++l +e+ ++W vk+++ + ++ +++GW F k+n+++egD + + +d+ + +++v+ XP_027077418.1 197 RTQMHKLMLSKGFISKNNIE--LGSNVMLCNEKEEKWPVKFTHFRDGR-ACIGTGWMAFWKDNRMCEGDKFKLVFDEGrGG--KMITVC 280 556688*******99766..5668***********8766664.56899*************988887754233..467666 PP

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence
MVKRGRGRPR KDSSSSSYLS FMDVRPEFFK VFLPDRVPPL FVKKFSGLVC KRIKLRCIDG 60 KIWDVDVEET QEGVFMKNGW QAFADHHLLK LGEFLVFRYD GNSVFTVKIF RTHGCKEEAF 120 VREKIAADVK IEPLEDQIAA TEHTCAKHSC NSDGEGNKLD TSRGVREGKQ QMSSRFHSQT 180 VQMERDSEFG SIRSISRTQM HKLMLSKGFI SKNNIELGSN VMLCNEKEEK WPVKFTHFRD 240 GRACIGTGWM AFWKDNRMCE GDKFKLVFDE GRGGKMITVC KV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	11	KRGRGRPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	2e-24	B3 family protein