PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027077308.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family LBD
Protein Properties Length: 176aa    MW: 19339.9 Da    PI: 8.3902
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027077308.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260146.67e-46131121100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+CakdCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la
  XP_027077308.1  13 PCAACKLLRRRCAKDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLA 107
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     l+++e
  XP_027077308.1 108 LAQAE 112
                     99976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    
MKENSRKQGA ASPCAACKLL RRRCAKDCVF APYFPADEPQ KFASVHKVFG ASNVNKMLQE  60
LPEHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID VLQTQLALAQ AEVVQMRMRQ  120
FSSISPGTAT NSPDHNNITS PSSSRHTQSH HDRTSLFAMG MVIDHQASMG ESLWSC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.12e-78LBD family protein