PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027077175.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 727aa    MW: 82080.5 Da    PI: 5.3088
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027077175.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.31.6e-1073557242373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +  L++cA++v+s+d++ a++ L+ l+++as++gdp qRla+ f++AL+arla++++ l +al++++ +   +seel+al++f+ + P+ ++  +
  XP_027077175.1 355 IAMLISCAQFVASDDHSTANEQLKLLRQHASSSGDPHQRLAFIFVNALEARLAGNGHDLHAALTSKPIA---TSEELKALRVFF-CAPFRQIYAF 445
                     678**********************************************************99999998...899*******98.78******** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN++Ilea+++++++Hi+Df+i+ G+QWp+L+q L+++++gpp+lRiTg++ p++g   + ++e+tg+rLak++++++vpfe+++++++++e++
  XP_027077175.1 446 FANKMILEAASNATTLHIVDFGITFGFQWPNLIQRLSNKDGGPPKLRITGINFPQPGlrPAAKIEQTGHRLAKYCKRFNVPFEYQAIATRNWEKI 540
                     **********************************************************9***************************9999***** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++eeL++k++E+laV +++  +++lde v  e +rd++L+l+++++P+++v     a+++++ Fl rf eal ++s++fd l+++lpr++ +r+k
  XP_027077175.1 541 TIEELKLKRNEVLAVAFQFDSKNILDELVGNECPRDAILSLIRTMNPDILVTEVLSAQLSGPFFLSRFREALFFFSTIFDVLDNNLPRKDGQRMK 635
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      E+e+lg ei n+vaceg +r+er+et+++W++r ++aGF+++pl+++ +k+ ++ +++ + + ++ +e+  +l++gWk++ + ++S W
  XP_027077175.1 636 FEQEFLGTEIFNIVACEGLARVERCETYKQWQARYKRAGFRQLPLNQDLMKELRSKVKEGYHKDFMFDEDGCWLLQGWKGKVICACSPW 724
                     ***********************************************************99888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    
MKPVESKTSL NSDGENMTSP ESLDPVNGFG FDGDTVYASL RSEDPSTYSL FYNMSSEFDF  60
LDEYEFYPVL KYINQMLMEE NVDEQPSMSH DPLAIQAAEK SFYEILGENY SPSPLETSVA  120
ALERNAQTPE GFSESSTKDS RNSSRSSISA APSPVLDPNE WPAKQHCPLG NSLESSFQTN  180
SIESPPQLKN LTICGDGQVG SLTDKNLVSS FYSDSRTMLQ FKKGLEEGNK FLPTGNQLVI  240
DLDKYTFPSE MKNAELVPKG NKDKEEKLNN GLRGRKHQYL DDSDSYIRRS NKQSALYEED  300
VELSETIERA LLYGDVKPSH GFSETLHNDQ LLHRSHVGKS QTERQVTDGG PFDLIAMLIS  360
CAQFVASDDH STANEQLKLL RQHASSSGDP HQRLAFIFVN ALEARLAGNG HDLHAALTSK  420
PIATSEELKA LRVFFCAPFR QIYAFFANKM ILEAASNATT LHIVDFGITF GFQWPNLIQR  480
LSNKDGGPPK LRITGINFPQ PGLRPAAKIE QTGHRLAKYC KRFNVPFEYQ AIATRNWEKI  540
TIEELKLKRN EVLAVAFQFD SKNILDELVG NECPRDAILS LIRTMNPDIL VTEVLSAQLS  600
GPFFLSRFRE ALFFFSTIFD VLDNNLPRKD GQRMKFEQEF LGTEIFNIVA CEGLARVERC  660
ETYKQWQARY KRAGFRQLPL NQDLMKELRS KVKEGYHKDF MFDEDGCWLL QGWKGKVICA  720
CSPWVPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein