PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027077158.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 749aa MW: 84240.4 Da PI: 5.9555 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 339.3 | 6.8e-104 | 379 | 746 | 4 | 373 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 lL++cA++v+++d++ a++ L++++++as gdp qRla+ +++AL+arla+++ l al++++ s ++++l+a++++ +sP+ + a XP_027077158.1 379 LLISCAQFVAADDHRTATEKLKQIRQHASCLGDPHQRLAFILVNALEARLAGTGRDLHVALTSKRIS---TADQLKAYRVYL-CSPLRPTFSFFA 469 8***************************************************999999888888887...899999999865.99**999999** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191 N++Ilea+++++ +Hi+Df+i+ G+QWp+L+q+L++R++gpp+lRiTg++ p++g +e++++tg+rLak++e+++vpfe++++++++++++++ XP_027077158.1 470 NEMILEAASRATILHIVDFGITFGFQWPTLIQQLSNRDGGPPMLRITGIDFPQPGfrPAESIQQTGHRLAKYCERFNVPFEYQAIATRNWDKITI 564 ******************************************************9*****************************9999******* PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 eeL++ ++E+laV +++ l+++ d+ v+ e +rd+vL+l++ ++P+++v a+++++ Fl+rf +al+++ ++fd+++++lpr++ +r+k E XP_027077158.1 565 EELKLTRNEVLAVACQFGLKNISDDMVEGECPRDAVLSLIRAMNPDILVTDVLSAQLSGPFFLTRFRDALSFFFTMFDAIDNNLPRKDAQRMKFE 659 *********************************************************************************************** PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +e+lg ++ n+vaceg +r+er+et++kW++r ++aGF+++pl+++ k+ + ++k + + ++++e+ ++++gWk++ + ++S+W XP_027077158.1 660 QEFLGTQLLNIVACEGLARVERCETYRKWHARYNRAGFRQLPLNQDLLKELRGKVKKAYHKDFMLDEDGCWMLQGWKGKIISACSCW 746 ***********************************************************888************************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 749 aa Download sequence |
MDHQFLNLNG SGSDGTVVSS LEQSELNFQL QKVWDPVKRF GFNDGIVFGS LDSEPLDPSS 60 FAPFFNVSTE VDFPDEHECY PVLKHINQML MEENLEEQQR MSTDPLALQA AEKSLYEILG 120 KNYPHSPRAT FVTALENNAH TPDVFSESSS NHVANCSDSG SNSAASWPIP EVSELSGKQG 180 HHLVNSCKSS FHTNSVQCLH MLKNSTLCGN GQVASLTDEN LIPSFYSNHE TMMLFKRGLE 240 EGKKFLPSGN QLVVDLDKHT LSLKLELLAE KKKDEVEKLD EISGGRKHQN QDDDDSLRGR 300 SNKQSATSEE EVELSELLDR VLLHADSKGL EAYSDVDVEQ PNGSFKTLSR SKFLHRSRVG 360 MSPEKRLGAE GEALDLFGLL ISCAQFVAAD DHRTATEKLK QIRQHASCLG DPHQRLAFIL 420 VNALEARLAG TGRDLHVALT SKRISTADQL KAYRVYLCSP LRPTFSFFAN EMILEAASRA 480 TILHIVDFGI TFGFQWPTLI QQLSNRDGGP PMLRITGIDF PQPGFRPAES IQQTGHRLAK 540 YCERFNVPFE YQAIATRNWD KITIEELKLT RNEVLAVACQ FGLKNISDDM VEGECPRDAV 600 LSLIRAMNPD ILVTDVLSAQ LSGPFFLTRF RDALSFFFTM FDAIDNNLPR KDAQRMKFEQ 660 EFLGTQLLNI VACEGLARVE RCETYRKWHA RYNRAGFRQL PLNQDLLKEL RGKVKKAYHK 720 DFMLDEDGCW MLQGWKGKII SACSCWIPA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-155 | GRAS family protein |