PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027076997.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family RAV
Protein Properties Length: 384aa    MW: 44118.7 Da    PI: 6.5285
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027076997.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.27.1e-12112159155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +++kGV   k +grW A+I+       + r++lg+f ++ eAa a++ a+ kl g
  XP_027076997.1 112 PRFKGVVIQK-NGRWGAQIYA------HERIWLGTFKSEIEAAMAYDSAAIKLQG 159
                     689***9888.8*******99......7**********99***********9987 PP
2B377.51.5e-24228325185
                     EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                     f k+ltpsdv++++rlv+pkk+a  +                   e + +l++ d+s rsW+++++y+k+s+++v+t+GW+++v+ +gL+++D+v
  XP_027076997.1 228 FHKELTPSDVGNLNRLVIPKKYALMYfphlscdaeetdediA--GEDDAELVFFDRSMRSWKFRYCYWKSSQSFVFTRGWNRYVRNKGLQAKDVV 320
                     89******************************9988887442..336789********************************************* PP

                     EEEE- CS
              B3  81 vFkld 85 
                      F+l 
  XP_027076997.1 321 SFSLF 325
                     **964 PP
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    
MNELMREHDI IKNLPSRNEG RLIFTNAVVK NLLESISENF GYDFVHSRAE ADWSILLKGC  60
RIYDFGNEFT MQEQSEISGA ATNAIQEISD SNSNSYVIQN KRQKLDNKVD SPRFKGVVIQ  120
KNGRWGAQIY AHERIWLGTF KSEIEAAMAY DSAAIKLQGG DAYRNFPWTN ITSEEPKFQS  180
QFSTQAVLNM IKDGSYPVKF VEYLRAQSFI QSFTTMPSNG GLVCKKLFHK ELTPSDVGNL  240
NRLVIPKKYA LMYFPHLSCD AEETDEDIAG EDDAELVFFD RSMRSWKFRY CYWKSSQSFV  300
FTRGWNRYVR NKGLQAKDVV SFSLFEFKNG SDEVQPIFMI DAEYHQSFRG GLMLNSSRDE  360
NNFPETEPNG STKRGLKLFG VQII
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.16e-87RAV family protein