PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027076947.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | FAR1 | ||||||||
Protein Properties | Length: 803aa MW: 92314.4 Da PI: 7.5612 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 74.1 | 3e-23 | 26 | 113 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fYn+YA ++GFsvrk++ +k ++g +t+r++ C keg +++ + + + +rtra t+tgC ak+++ + + + k++v++++leHnHel XP_027076947.1 26 QFYNKYAFKMGFSVRKDYLNKD-KDGVTTSRRYSCCKEGVKRKYEGD-VMPKRTRAPTKTGCGAKMVIVLFRgTMKYRVHDIVLEHNHEL 113 6*****************9998.8999****************9999.999*******************999****************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 803 aa Download sequence |
MDCSKLAEDG TPELGMEFNI EDDAYQFYNK YAFKMGFSVR KDYLNKDKDG VTTSRRYSCC 60 KEGVKRKYEG DVMPKRTRAP TKTGCGAKMV IVLFRGTMKY RVHDIVLEHN HELHIVQCAH 120 IMPSQRKVSE AQGFQAEISE DAGLSLKQSH ELMGKEASGM GNVGYTREDL KRYLRTRRER 180 SLKYGEAGSM LNYFQEQTLE NPSFFHAVQL DCEEQITNIF WADAGMLIDY KFFGDVVTFD 240 TTYKTNKEYR PLGVFVGFNQ HRQIVIFGAA LMYDETIDSF KWVFGTFLEA MCGKRPSTIL 300 TDQDHAMAAA LSVVMPETFH GLCTFHIRRN FMKHLGNHYK ENSDLPYMFG ACMYEFEEVE 360 QFNRMWEAMV KKHNLENNEW LSGLYRIRDK WARCMMKERW TAGMRSTQLS ESLNAAIKNH 420 LKLDHDLVQF FRHFNRVVDE KRHNELIAEY EMRQKLPMVG LRQTPMLVHA SETYSPTVFV 480 AFQNEYGEST AMVILRQQDA AMIVEFAVMR YDGGPERIVV FNRNDLSVCC SCKKYENEGI 540 LCGHALKVFD TVGIKIIPPE YIKRRWTKRA RAGDCFDRRR REVVADPKIM ISTRYRELAP 600 AMIKVATRAA MSEDTSKVAI TVISDLAKRV ELLLSESEEQ PLQNQKNLNM EERDKIEIVN 660 EMGEAVVARG IKKRGGGKKS RVMRSWINKF DRVKRKSRLS RTTQTTASES EPTSVSIEEY 720 MFMGCHSSTD SVSTHSMSQT VNGPPNAIAP NIDESEMEER AALLTHCDVD AYHVFAPSPQ 780 GRNNTQGLQL RADVASPENE IDE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 563 | 581 | KRRWTKRARAGDCFDRRRR |
2 | 577 | 582 | DRRRRE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-108 | FAR1 family protein |