PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027076753.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 325aa MW: 36223.7 Da PI: 7.6333

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027076753.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.9	1.4e-42	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk lrrkC+++Cv+apyfp +qp+kf nvh++FGasnv kll++l + +reda++sl+yeAe r+rdPvyG+vg+i+ lqq+l+q++++l+ XP_027076753.1 7 PCAACKCLRRKCTQECVFAPYFPPDQPQKFINVHRVFGASNVAKLLNELGTGQREDAVNSLAYEAEYRLRDPVYGCVGLISILQQKLKQVQHDLN 101 7********************************************************************************************** PP DUF260 96 llkee 100 +k+e XP_027076753.1 102 NAKKE 106 99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence
MSSSNSPCAA CKCLRRKCTQ ECVFAPYFPP DQPQKFINVH RVFGASNVAK LLNELGTGQR 60 EDAVNSLAYE AEYRLRDPVY GCVGLISILQ QKLKQVQHDL NNAKKELATY IGPSAMLPLF 120 QHPGFMQQHP NNPSASTVMP YAMQPMIGLP TGVAAPHGGP LIIRDAQQQQ QQQQQQQMYE 180 AQQYAAAVAA RDQEMYRAYE QQQQQQPPPQ ELMRFNSGFE GAGPAAATAF NTMSCGAAMS 240 PSLALGSYEA VPYHQISQQQ QQQQQLPPEH SHSHHHHHNQ FQLQSQLMLQ QQLPLQQSHH 300 QPQAAQQQHP QRAKSEEGRS VGPSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	2e-79	LBD family protein