PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027076625.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 489aa    MW: 56082.2 Da    PI: 8.7863
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027076625.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.61.1e-1325991598
                    -EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     + +p +f+ ++ ggk  ++ + +l+    ++W+v++    +++  +l++GW+ F+ +n+L++gDf vF+++g++ f   v vf+
  XP_027076625.1 25 GVKIPASFL-KYlGGKI-SENQAVLRRGGVKEWRVEI----SDQ--WLREGWRAFAVENNLQVGDFAVFEHEGNMVF--EVLVFD 99
                    578******.6645553.445799999999*******....443..5*************************99999..777776 PP
2B355.31.2e-171612431096
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +l  +rl +p++fa e+g+   ++  ++l+d+s rsW++k+  + +s+   ++ GWk+F+ka+gLkegD +v++l+++ ++ +v+ +
  XP_027076625.1 161 NLLYHRLNIPRDFAMENGLF-GRECNIKLRDQSQRSWSLKI--KSSSDCASIQCGWKSFAKAQGLKEGDEFVLELTEN-GEAPVFNF 243
                     455689***********554.33458***************..8888889************************9875.44466665 PP
3B358.11.6e-18272359495
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      ++ ++  ++++l+lp kfa+++++++ +s +l+l+d++ rsW  +l  + +++r+ ++ G  eF  an+LkegD++ F+l++ +++++v+ 
  XP_027076625.1 272 STIEPHCIRRCILYLPMKFARSNDLSN-RSCKLILKDPKKRSWHAEL--NSRGSRVCISFGLDEFFTANDLKEGDTCSFELVE-NGETPVIN 359
                     567889999**************9885.677****************..999999*************************998.55556765 PP
4B358.99e-19384472496
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++++++ ks+ l lp kfa+ +g+ k ++ +++++d + r W+vkl  + +++r+vl++GW++  +angLk+gD   F+ ++ +++++vv +
  XP_027076625.1 384 STIKPYNIKSCVLHLPVKFAKPNGLTKLKG-EMIVKDDRQRLWKVKL--KDRGDRVVLSSGWSNISRANGLKVGDRYKFEIIK-KGKRPVVNF 472
                     56799******************9998776.9***************..9999***************************998.777788865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    
MSMRTRIQPE KPHFFKPILP GFIDGVKIPA SFLKYLGGKI SENQAVLRRG GVKEWRVEIS  60
DQWLREGWRA FAVENNLQVG DFAVFEHEGN MVFEVLVFDP SHCEREYASI DDETKCSKKF  120
KAAEIPRSKK VKLELSDDQE EPDSTDQICH PYFIFTVKPI NLLYHRLNIP RDFAMENGLF  180
GRECNIKLRD QSQRSWSLKI KSSSDCASIQ CGWKSFAKAQ GLKEGDEFVL ELTENGEAPV  240
FNFYGKDKAS TRKSGKEVSW RDEEPVNPHF TSTIEPHCIR RCILYLPMKF ARSNDLSNRS  300
CKLILKDPKK RSWHAELNSR GSRVCISFGL DEFFTANDLK EGDTCSFELV ENGETPVINF  360
LTLLTKDDQP PPQPATDDHS YFISTIKPYN IKSCVLHLPV KFAKPNGLTK LKGEMIVKDD  420
RQRLWKVKLK DRGDRVVLSS GWSNISRANG LKVGDRYKFE IIKKGKRPVV NFHCKFLKSE  480
EDSPALTPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.14e-53B3 family protein