PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027076623.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 492aa    MW: 56383.5 Da    PI: 8.6804
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027076623.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.61.1e-1325991598
                    -EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     + +p +f+ ++ ggk  ++ + +l+    ++W+v++    +++  +l++GW+ F+ +n+L++gDf vF+++g++ f   v vf+
  XP_027076623.1 25 GVKIPASFL-KYlGGKI-SENQAVLRRGGVKEWRVEI----SDQ--WLREGWRAFAVENNLQVGDFAVFEHEGNMVF--EVLVFD 99
                    578******.6645553.445799999999*******....443..5*************************99999..777776 PP
2B355.31.2e-171642461096
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +l  +rl +p++fa e+g+   ++  ++l+d+s rsW++k+  + +s+   ++ GWk+F+ka+gLkegD +v++l+++ ++ +v+ +
  XP_027076623.1 164 NLLYHRLNIPRDFAMENGLF-GRECNIKLRDQSQRSWSLKI--KSSSDCASIQCGWKSFAKAQGLKEGDEFVLELTEN-GEAPVFNF 246
                     455689***********554.33458***************..8888889************************9875.44466665 PP
3B358.11.7e-18275362495
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      ++ ++  ++++l+lp kfa+++++++ +s +l+l+d++ rsW  +l  + +++r+ ++ G  eF  an+LkegD++ F+l++ +++++v+ 
  XP_027076623.1 275 STIEPHCIRRCILYLPMKFARSNDLSN-RSCKLILKDPKKRSWHAEL--NSRGSRVCISFGLDEFFTANDLKEGDTCSFELVE-NGETPVIN 362
                     567889999**************9885.677****************..999999*************************998.55556765 PP
4B358.99.1e-19387475496
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++++++ ks+ l lp kfa+ +g+ k ++ +++++d + r W+vkl  + +++r+vl++GW++  +angLk+gD   F+ ++ +++++vv +
  XP_027076623.1 387 STIKPYNIKSCVLHLPVKFAKPNGLTKLKG-EMIVKDDRQRLWKVKL--KDRGDRVVLSSGWSNISRANGLKVGDRYKFEIIK-KGKRPVVNF 475
                     56799******************9998776.9***************..9999***************************998.777788865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    
MSMRTRIQPE KPHFFKPILP GFIDGVKIPA SFLKYLGGKI SENQAVLRRG GVKEWRVEIS  60
DQWLREGWRA FAVENNLQVG DFAVFEHEGN MVFEVLVFDP SHCEREYASI DDETKCSKKF  120
KAAATEEIPR SKKVKLELSD DQEEPDSTDQ ICHPYFIFTV KPINLLYHRL NIPRDFAMEN  180
GLFGRECNIK LRDQSQRSWS LKIKSSSDCA SIQCGWKSFA KAQGLKEGDE FVLELTENGE  240
APVFNFYGKD KASTRKSGKE VSWRDEEPVN PHFTSTIEPH CIRRCILYLP MKFARSNDLS  300
NRSCKLILKD PKKRSWHAEL NSRGSRVCIS FGLDEFFTAN DLKEGDTCSF ELVENGETPV  360
INFLTLLTKD DQPPPQPATD DHSYFISTIK PYNIKSCVLH LPVKFAKPNG LTKLKGEMIV  420
KDDRQRLWKV KLKDRGDRVV LSSGWSNISR ANGLKVGDRY KFEIIKKGKR PVVNFHCKFL  480
KSEEDSPALT PN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-52B3 family protein