PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027076523.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 362aa MW: 40298.4 Da PI: 5.2777

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027076523.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.7	1.3e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +++ +v ++G g+W++++++ g++R++k+c++rw +yl XP_027076523.1 14 RGPWTPEEDAKILAYVSRHGIGNWTLVPQKAGLNRCGKSCRLRWTNYL 61 89********************************************97 PP
2	Myb_DNA-binding	46.9	6.2e-15	68	110	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++T+eE+e ++++++ G++ W+ Ia+ ++ gRt++++k++w++ XP_027076523.1 68 DNFTPEEEECILELHRTIGSR-WSWIAKQLP-GRTDNDVKNYWNT 110 68*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MGRPPCCDKA NVKRGPWTPE EDAKILAYVS RHGIGNWTLV PQKAGLNRCG KSCRLRWTNY 60 LRPDLKHDNF TPEEEECILE LHRTIGSRWS WIAKQLPGRT DNDVKNYWNT KLKKKLFNMG 120 IDPVTHKPFS QIFTEFGKLG NLPSTINQNA LLNTEPRIKP EPLLLPQKFP NANNLQIIEQ 180 YGRTLSGNFL GQAASQLQIN GQETLILPHL LGGISTSASS PSSSSSVMNF GSQSFPCEPP 240 QLQKSPSSPS NWNETILVDP FPSTGIEQNE EDYKIRGISS PDDISSAVVQ EETPLHAATC 300 IIENEVNDKA GVSCYGLKPE PEAMRYMESS SSAADSFLES ILASDSQLRL EFPELLDGFC 360 DY

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MGRPPCCDKA NVKRGPWTPE EDAKILAYVS RHGIGNWTLV PQKAGLNRCG KSCRLRWTNY  60
LRPDLKHDNF TPEEEECILE LHRTIGSRWS WIAKQLPGRT DNDVKNYWNT KLKKKLFNMG  120
IDPVTHKPFS QIFTEFGKLG NLPSTINQNA LLNTEPRIKP EPLLLPQKFP NANNLQIIEQ  180
YGRTLSGNFL GQAASQLQIN GQETLILPHL LGGISTSASS PSSSSSVMNF GSQSFPCEPP  240
QLQKSPSSPS NWNETILVDP FPSTGIEQNE EDYKIRGISS PDDISSAVVQ EETPLHAATC  300
IIENEVNDKA GVSCYGLKPE PEAMRYMESS SSAADSFLES ILASDSQLRL EFPELLDGFC  360
DY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	2e-75	MYB family protein