PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027076077.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 308aa MW: 36241.2 Da PI: 9.7218

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027076077.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.3	1.3e-13	11	101	1	94
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k l+ +d +++ +++p f++++ ++ ++++++ +++ +sW v++ rkk++ y+ + W +Fvk+++Lk gD ++F+l+++++f XP_027076077.1 11 FIKLLM-EDDFTRE-IRIPYAFVRNFkeKLFSRCTIESEAKNSVRNSWPVRI--RKKGRYyYICKLSWPKFVKDHHLKLGDYLLFHLIDKTTF-- 99 566664.4555555.8*****8887755566777777888888***..888888677789*******************987777.. PP EE CS B3 93 vv 94 +v XP_027076077.1 100 KV 101 44 PP
2	B3	43.6	5.5e-14	226	296	12	89
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 grl +p++f ++ ++ +k+++l+ e+ r+W vk+ + +s+ ++kGW eF ka +L+ g+++ F+l rs XP_027076077.1 226 HMGRLNIPRPFSRATKLAM--EKEVVLRGEDQREWPVKI--NERSE---IGKGWTEFRKAYKLEKGEICRFTLLARSA 296 458999****9998885..458***********..77774...8********************876654 PP

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence
MEQNLNFNPS FIKLLMEDDF TREIRIPYAF VRNFKEKLFS RCTIESEAKN SVRNSWPVRI 60 RKKGRYYYIC KLSWPKFVKD HHLKLGDYLL FHLIDKTTFK VKPYGADCCP KKFNVHKSFS 120 SSSDDESDDG SDDDSDETEF YGDDGIGPSK VHPARKKVYT KYQIDRDNFR SNKFRKLKKT 180 RKSGVGKRVL EIESEDGEEV EANEMDGYFD LNAENPYFIF RLKQHHMGRL NIPRPFSRAT 240 KLAMEKEVVL RGEDQREWPV KINERSEIGK GWTEFRKAYK LEKGEICRFT LLARSARKNG 300 HELLKGAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	178	RKKVYTKYQIDRDNFRSNKFRKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09780.1	2e-12	B3 family protein